This repo contains accessible, interactive, and cloud-enabled workflows that support the analyses of data from the National Cancer Institute (NCI) Genomic Data Commons (GDC). In particular, these workflows are designed to run in the Biodepot-workflow-builder (Bwb) platform. Bwb is a user-friendly graphical platform for building and executing bioinformatics workflows that uses software containers to ensure reproducibility and facilitate installation and execution of workflows.
Our platform and workflows are cloud-enabled. See EC2 readme for instructions how to set up AWS EC2 instances to run Bwb.
These workflows and documentation are developed by: Ling-Hong Hung, Robert Schmitz, Bryce Fukuda, KV Le, Anthony Nguyen, and Ka Yee Yeung at Biodepot LLC; Varik Hoang and Wes Lloyd at University of Washington.
For questions, please contact biodepot.llc@gmail.com.
This project has been funded in whole or in part with Federal funds from the National Cancer Institute, National Institutes of Health, Department of Health and Human Services, under Contract No. 75N91020C00009.