Merge pull request #80 from BlueBrain/sscx-emodels-paper

merge sscx-emodels-paper branch to master
BlueBrain · Aug 8, 2022 · 14507c9 · 14507c9
2 parents 845f826 + 29e516b
commit 14507c9
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diff --git a/bluepyefe/extractor.py b/bluepyefe/extractor.py
@@ -1100,6 +1100,10 @@ def mean_features(self):
                     self.dataset_mean[expname]['bc_ld_features'][feature][
                         str(target)] = bcld
 
+        with open(self.maindirname + "dataset_means.json", "w") as handle:
+            json.dump(
+                self.dataset_mean, handle, indent=4, cls=tools.NumpyEncoder)
+
     def get_threshold(self, amp, numspikes):
         """Get the spiking threshold of a cell by taking the smallest current
         amplitude for which it fires"""

diff --git a/bluepyefe/formats/axon.py b/bluepyefe/formats/axon.py
@@ -432,7 +432,7 @@ def sampling_rate_from_header(header):
         # read sampling rate
         sampling_rate = 1.e6 / header['protocol']['fADCSequenceInterval']
 
-    return(1, {"r": sampling_rate, "ru": "Hz"})
+    return (1, {"r": sampling_rate, "ru": "Hz"})
 
 
 def get_nbepisod(header):