Update compatibility for ultraliser v0.4.0

[asoplata]

This makes the necessary changes for placement-hints' mesh creation to use the current version of Ultraliser, v0.4.0

[asoplata]

I tried beginning to run the tests, and unfortunately updating the tests for ultraliser v0.4.0 will likely be a significant pain: it seems the tests are hardcoded to use ultraliser v0.1.0 ( https://github.com/BlueBrain/atlas-placement-hints/blob/main/tests/distances/test_create_watertight_mesh.py#L19 ), and I know for a fact that ultraliser has gone through breaking changes across its versions.

[asoplata]

The tests begin to fail when transitioning from ultraliser v0.3.0 (available in archive/2022-05, among others) to ultraliser v0.4.0. Simply changing the location of the executable causes the tests to fail. One cause of this is almost certainly because the filenames/formats that ultraVolume2Mesh expects seem to have changed when moving to v0.4.0, which is part of what I had to change in the commit in this PR.

[asoplata]

Don't worry about this PR for now -- see #11 (comment)

[arnaudon]

I've done it in #18

[arnaudon]

I guess we can close this one then?

[mgeplf]

yup, fine on my end, @asoplata?

[asoplata]

Sure