Current version 2022.09.16
The tngs project aims to provide a collection of tools supporting work with microbial genomics. This is the perl edition which is designed to provide a collection of useful command line tools in a single script with few dependencies.
Current tools:
fileinfo (basic qc info from fastq or fasta WGS-assembly)
downsample (downsamles fastq files)
filtercontigs (remove short and/or low-coverage contigs)
kmeroverlapp (counts how many k-mers present in a reference genome are present in an assembly)
kmerhisto (makes histogram of k-mers in fastq read files, estimates genome size, measures gc-bias)