Add ability to load SPARE-* model #24
Conversation
There was a problem hiding this comment.
Please see comments.
The application itself crashes for me with below message.
python -m iSTAGING.main --data_file D:\ashish\Data\iSTAGINGData\withsparescores\istaging.pkl.gz --harmonization_model_file D:\ashish\Data\iSTAGINGData\MUSE_harmonization_model.pkl --SPARE_model_file D:\ashish\Data\iSTAGINGData\SPARE_model_LIN-SVM_single_MUSE_ROIs_RES.pkl.gz
D:\ashish\Installs\Python\iStagingENV\lib\site-packages\sklearn\base.py:310: UserWarning: Trying to unpickle estimator StandardScaler from version 0.24.2 when using version 0.24.1. This might lead to breaking code or invalid results. Use at your own risk.
warnings.warn(
D:\ashish\Installs\Python\iStagingENV\lib\site-packages\sklearn\base.py:310: UserWarning: Trying to unpickle estimator SVR from version 0.24.2 when using version 0.24.1. This might lead to breaking code or invalid results. Use at your own risk.
warnings.warn(
D:\ashish\Installs\Python\iStagingENV\lib\site-packages\sklearn\base.py:310: UserWarning: Trying to unpickle estimator SVC from version 0.24.2 when using version 0.24.1. This might lead to breaking code or invalid results. Use at your own risk.
warnings.warn(
setting SPARE models
Running harmonization.
Harmonization done.
Pooled variance: 1476.461182
Computing SPARE-*.
Traceback (most recent call last):
File "D:\ashish\Installs\Python\iStagingENV\lib\site-packages\pandas\core\indexes\base.py", line 3080, in get_loc
return self._engine.get_loc(casted_key)
File "pandas_libs\index.pyx", line 70, in pandas._libs.index.IndexEngine.get_loc
File "pandas_libs\index.pyx", line 101, in pandas._libs.index.IndexEngine.get_loc
File "pandas_libs\hashtable_class_helper.pxi", line 4554, in pandas._libs.hashtable.PyObjectHashTable.get_item
File "pandas_libs\hashtable_class_helper.pxi", line 4562, in pandas._libs.hashtable.PyObjectHashTable.get_item
KeyError: 'RES_ICV_Sex_MUSE_Volume_4'
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "D:\ashish\work\projects\iSTAGING-Tools\iSTAGING\mainwindow.py", line 425, in OnProcessSpareClicked
self.model.SetData(p.DoSPARE(self.model.GetCompleteData(),
File "D:\ashish\work\projects\iSTAGING-Tools\iSTAGING\processes.py", line 66, in DoSPARE
y_hat = predictAD(data, ADModel)
File "D:\ashish\work\projects\iSTAGING-Tools\iSTAGING\processes.py", line 39, in predictAD
idx = ~data[model['predictors'][0]].isnull()
File "D:\ashish\Installs\Python\iStagingENV\lib\site-packages\pandas\core\frame.py", line 3024, in getitem
indexer = self.columns.get_loc(key)
File "D:\ashish\Installs\Python\iStagingENV\lib\site-packages\pandas\core\indexes\base.py", line 3082, in get_loc
raise KeyError(key) from err
KeyError: 'RES_ICV_Sex_MUSE_Volume_4'
No description provided.