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| # Platform | ||
|
|
||
| |field |value | | ||
| |:--------|:-----------------------------------| | ||
| |version |R version 4.3.2 (2023-10-31) | | ||
| |os |macOS Sonoma 14.3.1 | | ||
| |system |x86_64, darwin20 | | ||
| |ui |RStudio | | ||
| |language |(EN) | | ||
| |collate |en_US.UTF-8 | | ||
| |ctype |en_US.UTF-8 | | ||
| |tz |America/New_York | | ||
| |date |2024-03-11 | | ||
| |rstudio |2023.12.1+402 Ocean Storm (desktop) | | ||
| |pandoc |2.8.0.1 @ /usr/local/bin/pandoc | | ||
|
|
||
| # Dependencies | ||
|
|
||
| |package |old |new |Δ | | ||
| |:-------|:-----|:----------|:--| | ||
| |LDlinkR |1.3.0 |1.3.0.9002 |* | | ||
|
|
||
| # Revdeps | ||
|
|
||
| ## Failed to check (1) | ||
|
|
||
| |package |version |error |warning |note | | ||
| |:-------|:-------|:-----|:-------|:----| | ||
| |GRaNIE |? | | | | | ||
|
|
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,2 @@ | ||
| package,old,new,delta | ||
| LDlinkR,1.3.0,1.3.0.9002,* |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,135 @@ | ||
| Library: /Users/myersta/Library/CloudStorage/OneDrive-NationalInstitutesofHealth/Rprojects_OneDrive/ldlinkr/revdep/library.noindex/LDlinkR/new | ||
| LDlinkR (1.3.0.9002) | ||
|
|
||
| Library: /Users/myersta/Library/CloudStorage/OneDrive-NationalInstitutesofHealth/Rprojects_OneDrive/ldlinkr/revdep/library.noindex/locuszoomr | ||
| abind (1.4-5) | ||
| AnnotationDbi (1.64.1) | ||
| AnnotationFilter (1.26.0) | ||
| AnnotationHub (3.10.0) | ||
| askpass (1.2.0) | ||
| base64enc (0.1-3) | ||
| Biobase (2.62.0) | ||
| BiocFileCache (2.10.1) | ||
| BiocGenerics (0.48.1) | ||
| BiocIO (1.12.0) | ||
| BiocParallel (1.36.0) | ||
| BiocVersion (3.18.1) | ||
| biomaRt (2.58.2) | ||
| Biostrings (2.70.2) | ||
| bit (4.0.5) | ||
| bit64 (4.0.5) | ||
| blob (1.2.4) | ||
| bslib (0.6.1) | ||
| cli (3.6.2) | ||
| codetools (0.2-19) | ||
| colorspace (2.1-0) | ||
| commonmark (1.9.1) | ||
| crayon (1.5.2) | ||
| crosstalk (1.2.1) | ||
| data.table (1.15.2) | ||
| DBI (1.2.2) | ||
| dbplyr (2.4.0) | ||
| DelayedArray (0.28.0) | ||
| digest (0.6.34) | ||
| EnsDb.Hsapiens.v75 (2.99.0) | ||
| ensembldb (2.26.0) | ||
| evaluate (0.23) | ||
| fansi (1.0.6) | ||
| farver (2.1.1) | ||
| fastmap (1.1.1) | ||
| filelock (1.0.3) | ||
| fontawesome (0.5.2) | ||
| formatR (1.14) | ||
| fs (1.6.3) | ||
| generics (0.1.3) | ||
| GenomeInfoDb (1.38.7) | ||
| GenomeInfoDbData (1.2.11) | ||
| GenomicAlignments (1.38.2) | ||
| GenomicFeatures (1.54.3) | ||
| GenomicRanges (1.54.1) | ||
| gggrid (0.2-0) | ||
| ggplot2 (3.5.0) | ||
| ggrepel (0.9.5) | ||
| glue (1.7.0) | ||
| gtable (0.3.4) | ||
| highr (0.10) | ||
| hms (1.1.3) | ||
| htmltools (0.5.7) | ||
| htmlwidgets (1.6.4) | ||
| httpuv (1.6.14) | ||
| httr (1.4.7) | ||
| interactiveDisplayBase (1.40.0) | ||
| IRanges (2.36.0) | ||
| isoband (0.2.7) | ||
| jquerylib (0.1.4) | ||
| jsonlite (1.8.8) | ||
| KEGGREST (1.42.0) | ||
| knitr (1.45) | ||
| labeling (0.4.3) | ||
| lambda.r (1.2.4) | ||
| later (1.3.2) | ||
| lattice (0.22-5) | ||
| lazyeval (0.2.2) | ||
| lifecycle (1.0.4) | ||
| magrittr (2.0.3) | ||
| MASS (7.3-60.0.1) | ||
| Matrix (1.6-5) | ||
| MatrixGenerics (1.14.0) | ||
| matrixStats (1.2.0) | ||
| memoise (2.0.1) | ||
| mgcv (1.9-1) | ||
| mime (0.12) | ||
| munsell (0.5.0) | ||
| nlme (3.1-164) | ||
| openssl (2.1.1) | ||
| pillar (1.9.0) | ||
| pkgconfig (2.0.3) | ||
| plogr (0.2.0) | ||
| plotly (4.10.4) | ||
| png (0.1-8) | ||
| prettyunits (1.2.0) | ||
| progress (1.2.3) | ||
| promises (1.2.1) | ||
| ProtGenerics (1.34.0) | ||
| purrr (1.0.2) | ||
| R6 (2.5.1) | ||
| rappdirs (0.3.3) | ||
| RColorBrewer (1.1-3) | ||
| Rcpp (1.0.12) | ||
| RCurl (1.98-1.14) | ||
| restfulr (0.0.15) | ||
| Rhtslib (2.4.1) | ||
| rjson (0.2.21) | ||
| rlang (1.1.3) | ||
| rmarkdown (2.26) | ||
| Rsamtools (2.18.0) | ||
| RSQLite (2.3.5) | ||
| rtracklayer (1.62.0) | ||
| S4Arrays (1.2.1) | ||
| S4Vectors (0.40.2) | ||
| sass (0.4.8) | ||
| scales (1.3.0) | ||
| shiny (1.8.0) | ||
| snow (0.4-4) | ||
| sourcetools (0.1.7-1) | ||
| SparseArray (1.2.4) | ||
| stringi (1.8.3) | ||
| stringr (1.5.1) | ||
| SummarizedExperiment (1.32.0) | ||
| sys (3.4.2) | ||
| tibble (3.2.1) | ||
| tidyr (1.3.1) | ||
| tidyselect (1.2.0) | ||
| tinytex (0.49) | ||
| utf8 (1.2.4) | ||
| vctrs (0.6.5) | ||
| viridisLite (0.4.2) | ||
| withr (3.0.0) | ||
| xfun (0.42) | ||
| XML (3.99-0.16.1) | ||
| xml2 (1.3.6) | ||
| xtable (1.8-4) | ||
| XVector (0.42.0) | ||
| yaml (2.3.8) | ||
| zlibbioc (1.48.0) | ||
| zoo (1.8-12) |
20 changes: 20 additions & 0 deletions
20
revdep/checks.noindex/locuszoomr/new/locuszoomr.Rcheck/00check.log
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,20 @@ | ||
| * using log directory ‘/Users/myersta/Library/CloudStorage/OneDrive-NationalInstitutesofHealth/Rprojects_OneDrive/ldlinkr/revdep/checks.noindex/locuszoomr/new/locuszoomr.Rcheck’ | ||
| * using R version 4.3.2 (2023-10-31) | ||
| * using platform: x86_64-apple-darwin20 (64-bit) | ||
| * R was compiled by | ||
| Apple clang version 14.0.0 (clang-1400.0.29.202) | ||
| GNU Fortran (GCC) 12.2.0 | ||
| * running under: macOS Sonoma 14.3.1 | ||
| * using session charset: UTF-8 | ||
| * using options ‘--no-manual --no-build-vignettes’ | ||
| * checking for file ‘locuszoomr/DESCRIPTION’ ... OK | ||
| * this is package ‘locuszoomr’ version ‘0.2.1’ | ||
| * package encoding: UTF-8 | ||
| * checking package namespace information ... OK | ||
| * checking package dependencies ... ERROR | ||
| Package required but not available: ‘cowplot’ | ||
|
|
||
| See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ | ||
| manual. | ||
| * DONE | ||
| Status: 1 ERROR |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,135 @@ | ||
| Library: /Users/myersta/Library/CloudStorage/OneDrive-NationalInstitutesofHealth/Rprojects_OneDrive/ldlinkr/revdep/library.noindex/LDlinkR/old | ||
| LDlinkR (1.3.0) | ||
|
|
||
| Library: /Users/myersta/Library/CloudStorage/OneDrive-NationalInstitutesofHealth/Rprojects_OneDrive/ldlinkr/revdep/library.noindex/locuszoomr | ||
| abind (1.4-5) | ||
| AnnotationDbi (1.64.1) | ||
| AnnotationFilter (1.26.0) | ||
| AnnotationHub (3.10.0) | ||
| askpass (1.2.0) | ||
| base64enc (0.1-3) | ||
| Biobase (2.62.0) | ||
| BiocFileCache (2.10.1) | ||
| BiocGenerics (0.48.1) | ||
| BiocIO (1.12.0) | ||
| BiocParallel (1.36.0) | ||
| BiocVersion (3.18.1) | ||
| biomaRt (2.58.2) | ||
| Biostrings (2.70.2) | ||
| bit (4.0.5) | ||
| bit64 (4.0.5) | ||
| blob (1.2.4) | ||
| bslib (0.6.1) | ||
| cli (3.6.2) | ||
| codetools (0.2-19) | ||
| colorspace (2.1-0) | ||
| commonmark (1.9.1) | ||
| crayon (1.5.2) | ||
| crosstalk (1.2.1) | ||
| data.table (1.15.2) | ||
| DBI (1.2.2) | ||
| dbplyr (2.4.0) | ||
| DelayedArray (0.28.0) | ||
| digest (0.6.34) | ||
| EnsDb.Hsapiens.v75 (2.99.0) | ||
| ensembldb (2.26.0) | ||
| evaluate (0.23) | ||
| fansi (1.0.6) | ||
| farver (2.1.1) | ||
| fastmap (1.1.1) | ||
| filelock (1.0.3) | ||
| fontawesome (0.5.2) | ||
| formatR (1.14) | ||
| fs (1.6.3) | ||
| generics (0.1.3) | ||
| GenomeInfoDb (1.38.7) | ||
| GenomeInfoDbData (1.2.11) | ||
| GenomicAlignments (1.38.2) | ||
| GenomicFeatures (1.54.3) | ||
| GenomicRanges (1.54.1) | ||
| gggrid (0.2-0) | ||
| ggplot2 (3.5.0) | ||
| ggrepel (0.9.5) | ||
| glue (1.7.0) | ||
| gtable (0.3.4) | ||
| highr (0.10) | ||
| hms (1.1.3) | ||
| htmltools (0.5.7) | ||
| htmlwidgets (1.6.4) | ||
| httpuv (1.6.14) | ||
| httr (1.4.7) | ||
| interactiveDisplayBase (1.40.0) | ||
| IRanges (2.36.0) | ||
| isoband (0.2.7) | ||
| jquerylib (0.1.4) | ||
| jsonlite (1.8.8) | ||
| KEGGREST (1.42.0) | ||
| knitr (1.45) | ||
| labeling (0.4.3) | ||
| lambda.r (1.2.4) | ||
| later (1.3.2) | ||
| lattice (0.22-5) | ||
| lazyeval (0.2.2) | ||
| lifecycle (1.0.4) | ||
| magrittr (2.0.3) | ||
| MASS (7.3-60.0.1) | ||
| Matrix (1.6-5) | ||
| MatrixGenerics (1.14.0) | ||
| matrixStats (1.2.0) | ||
| memoise (2.0.1) | ||
| mgcv (1.9-1) | ||
| mime (0.12) | ||
| munsell (0.5.0) | ||
| nlme (3.1-164) | ||
| openssl (2.1.1) | ||
| pillar (1.9.0) | ||
| pkgconfig (2.0.3) | ||
| plogr (0.2.0) | ||
| plotly (4.10.4) | ||
| png (0.1-8) | ||
| prettyunits (1.2.0) | ||
| progress (1.2.3) | ||
| promises (1.2.1) | ||
| ProtGenerics (1.34.0) | ||
| purrr (1.0.2) | ||
| R6 (2.5.1) | ||
| rappdirs (0.3.3) | ||
| RColorBrewer (1.1-3) | ||
| Rcpp (1.0.12) | ||
| RCurl (1.98-1.14) | ||
| restfulr (0.0.15) | ||
| Rhtslib (2.4.1) | ||
| rjson (0.2.21) | ||
| rlang (1.1.3) | ||
| rmarkdown (2.26) | ||
| Rsamtools (2.18.0) | ||
| RSQLite (2.3.5) | ||
| rtracklayer (1.62.0) | ||
| S4Arrays (1.2.1) | ||
| S4Vectors (0.40.2) | ||
| sass (0.4.8) | ||
| scales (1.3.0) | ||
| shiny (1.8.0) | ||
| snow (0.4-4) | ||
| sourcetools (0.1.7-1) | ||
| SparseArray (1.2.4) | ||
| stringi (1.8.3) | ||
| stringr (1.5.1) | ||
| SummarizedExperiment (1.32.0) | ||
| sys (3.4.2) | ||
| tibble (3.2.1) | ||
| tidyr (1.3.1) | ||
| tidyselect (1.2.0) | ||
| tinytex (0.49) | ||
| utf8 (1.2.4) | ||
| vctrs (0.6.5) | ||
| viridisLite (0.4.2) | ||
| withr (3.0.0) | ||
| xfun (0.42) | ||
| XML (3.99-0.16.1) | ||
| xml2 (1.3.6) | ||
| xtable (1.8-4) | ||
| XVector (0.42.0) | ||
| yaml (2.3.8) | ||
| zlibbioc (1.48.0) | ||
| zoo (1.8-12) |
20 changes: 20 additions & 0 deletions
20
revdep/checks.noindex/locuszoomr/old/locuszoomr.Rcheck/00check.log
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,20 @@ | ||
| * using log directory ‘/Users/myersta/Library/CloudStorage/OneDrive-NationalInstitutesofHealth/Rprojects_OneDrive/ldlinkr/revdep/checks.noindex/locuszoomr/old/locuszoomr.Rcheck’ | ||
| * using R version 4.3.2 (2023-10-31) | ||
| * using platform: x86_64-apple-darwin20 (64-bit) | ||
| * R was compiled by | ||
| Apple clang version 14.0.0 (clang-1400.0.29.202) | ||
| GNU Fortran (GCC) 12.2.0 | ||
| * running under: macOS Sonoma 14.3.1 | ||
| * using session charset: UTF-8 | ||
| * using options ‘--no-manual --no-build-vignettes’ | ||
| * checking for file ‘locuszoomr/DESCRIPTION’ ... OK | ||
| * this is package ‘locuszoomr’ version ‘0.2.1’ | ||
| * package encoding: UTF-8 | ||
| * checking package namespace information ... OK | ||
| * checking package dependencies ... ERROR | ||
| Package required but not available: ‘cowplot’ | ||
|
|
||
| See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ | ||
| manual. | ||
| * DONE | ||
| Status: 1 ERROR |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,7 @@ | ||
| ## revdepcheck results | ||
|
|
||
| We checked 2 reverse dependencies (1 from CRAN + 1 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package. | ||
|
|
||
| * We saw 0 new problems | ||
| * We failed to check 0 packages | ||
|
|
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