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Improve runmode testrun by updating params, adding mm10 #115

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slsevilla opened this issue Feb 5, 2024 · 1 comment · Fixed by #117
Closed
2 tasks done

Improve runmode testrun by updating params, adding mm10 #115

slsevilla opened this issue Feb 5, 2024 · 1 comment · Fixed by #117
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enhancement New feature or request
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@slsevilla
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slsevilla commented Feb 5, 2024

Describe what enhancement you'd like to see.
Need improvements to the testing environments

  • make the tinytest run the standard run (decrease contrast to one, samples to 5)
  • update defaults so only one q value is run, all peak callers, and both dedup and nondedup
    - [ ] create testrun_hg38 and testrun_mm10 runs
    - [ ] update all test samples
@slsevilla slsevilla added the enhancement New feature or request label Feb 5, 2024
@slsevilla slsevilla self-assigned this Feb 5, 2024
@slsevilla
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decided against adding mm10 as a test sample option - goal of test data is to check each rule works. running a dry run with the test data, switching the config to mm10 would still achieve the same result

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