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Update docs
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‎R/docs/articles/getting_started.html

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‎R/docs/articles/getting_started.md

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@@ -181,8 +181,8 @@ output1 = gng_m1("example", ncore=4)
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## Chain 1:
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## Chain 1:
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## Chain 1:
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## Chain 1: Gradient evaluation took 0.001939 seconds
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## Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 19.39 seconds.
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## Chain 1: Gradient evaluation took 0.001829 seconds
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## Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 18.29 seconds.
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## Chain 1: Adjust your expectations accordingly!
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## Chain 1:
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@@ -196,18 +196,18 @@ output1 = gng_m1("example", ncore=4)
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## Chain 1:
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## Chain 1: Begin stochastic gradient ascent.
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## Chain 1: iter ELBO delta_ELBO_mean delta_ELBO_med notes
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## Chain 1: 100 -830.450 1.000 1.000
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## Chain 1: 200 -815.664 0.509 1.000
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## Chain 1: 300 -812.693 0.341 0.018
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## Chain 1: 400 -809.323 0.256 0.018
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## Chain 1: 500 -809.234 0.205 0.004 MEDIAN ELBO CONVERGED
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## Chain 1: 100 -820.269 1.000 1.000
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## Chain 1: 200 -810.308 0.506 1.000
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## Chain 1: 300 -815.111 0.339 0.012
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## Chain 1: 400 -809.368 0.256 0.012
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## Chain 1: 500 -809.646 0.205 0.007 MEDIAN ELBO CONVERGED
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## Chain 1:
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## Chain 1: Drawing a sample of size 1000 from the approximate posterior...
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## Chain 1: COMPLETED.
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```
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```
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## Warning: Pareto k diagnostic value is 1.09. Resampling is disabled.
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## Warning: Pareto k diagnostic value is 1.25. Resampling is disabled.
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## Decreasing tol_rel_obj may help if variational algorithm has terminated
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## prematurely. Otherwise consider using sampling instead.
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```
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```
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## subjID xi ep rho
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## 1 1 0.03912684 0.1390364 5.971566
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## 2 2 0.03559554 0.1622292 6.154059
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## 3 3 0.04195460 0.1277940 5.922376
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## 4 4 0.03149474 0.1494447 6.223886
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## 5 5 0.03442572 0.1491020 6.168325
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## 6 6 0.04100730 0.1539260 6.288472
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## 7 7 0.04275452 0.1481033 5.792658
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## 8 8 0.03397865 0.1612648 6.510263
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## 9 9 0.03957498 0.1452006 6.064876
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## 10 10 0.04719602 0.1302818 5.554479
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## 1 1 0.03937858 0.1388763 5.991021
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## 2 2 0.03602277 0.1614945 6.180092
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## 3 3 0.04288713 0.1274827 5.941119
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## 4 4 0.03170505 0.1484355 6.262789
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## 5 5 0.03462090 0.1485741 6.184602
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## 6 6 0.04236850 0.1536645 6.334553
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## 7 7 0.04314376 0.1491778 5.797528
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## 8 8 0.03471143 0.1611320 6.538876
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## 9 9 0.03987275 0.1451317 6.083010
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## 10 10 0.04784353 0.1302289 5.546315
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```
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-->
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@@ -454,8 +454,8 @@ output3 = gng_m3(data="example", niter=2000, nwarmup=1000, modelRegressor=TRUE)
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## Chain 1:
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## Chain 1:
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## Chain 1:
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## Chain 1: Gradient evaluation took 0.004173 seconds
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## Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 41.73 seconds.
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## Chain 1: Gradient evaluation took 0.00253 seconds
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## Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 25.3 seconds.
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## Chain 1: Adjust your expectations accordingly!
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## Chain 1:
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## Chain 1:
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## Chain 1: Begin stochastic gradient ascent.
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## Chain 1: iter ELBO delta_ELBO_mean delta_ELBO_med notes
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## Chain 1: 100 -833.499 1.000 1.000
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## Chain 1: 200 -819.287 0.509 1.000
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## Chain 1: 300 -819.175 0.339 0.017
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## Chain 1: 400 -823.919 0.256 0.017
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## Chain 1: 500 -818.524 0.206 0.007 MEDIAN ELBO CONVERGED
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## Chain 1: 100 -823.918 1.000 1.000
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## Chain 1: 200 -826.958 0.502 1.000
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## Chain 1: 300 -814.838 0.340 0.015
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## Chain 1: 400 -818.443 0.256 0.015
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## Chain 1: 500 -817.985 0.205 0.004 MEDIAN ELBO CONVERGED
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## Chain 1:
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## Chain 1: Drawing a sample of size 1000 from the approximate posterior...
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## Chain 1: COMPLETED.
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```
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```
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## Warning: Pareto k diagnostic value is 1.34. Resampling is disabled.
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## Warning: Pareto k diagnostic value is 1.14. Resampling is disabled.
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## Decreasing tol_rel_obj may help if variational algorithm has terminated
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## prematurely. Otherwise consider using sampling instead.
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```

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‎R/docs/news/index.html

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‎R/docs/reference/HDIofMCMC.html

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‎R/docs/reference/index.html

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‎R/docs/reference/plotHDI.html

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