This repository contains code for the paper A multi-task domain-adapted model to predict chemotherapy response from mutations in recurrently altered cancer genes
Medrxiv: https://www.medrxiv.org/content/10.1101/2023.11.17.23298665v1
To run DruID, refer to the instructions and notebooks in the folder notebook.
experiments folder contains sample notebooks used across various experiments, like gene expression inputs, cnv etc.
script and src folders contain supporting scripts for annotation and common modules like VAE and data loading modules.
benchmarks contain sample code used for SOTA method comparison.