Add PHDC XML validation to integration tests

[robertmitchellv]

PULL REQUEST

Summary

Adding PHDC XML validation to integration tests. This will take a prepared FHIR bundle and run it through the PHDC Case Report parser to the PHDC Builder to produce PHDC Case Report XML that is checked against the HL7 CDA schema, which includes the SDTC extensions.

Additionally we're also adding the ability to set the correct xsi:type for <value> child elements of <observation>, which affects validation.

Related Issue

Fixes:

• When the PHDC endpoint /fhir-to-phdc is finished, run the returned PHDC XML output through an integration test via GitHub Actions #1069
• Add xsi:type to <value> child element of <observation> in PHDC #1406

Additional Information

XML validation is pain 🤕

[codecov]

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 96.94%. Comparing base (dd3b5ec) to head (0ae1f25).

Additional details and impacted files

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  Coverage   96.94%   96.94%           
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  Files          48       48           
  Lines        3048     3048           
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  Hits         2955     2955           
  Misses         93       93           

Flag	Coverage Δ
unit-tests	96.94% <ø> (ø)

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[robertmitchellv]

@DanielPaseltiner i think i'm going to address the new FHIR bundle after this lands if that sounds ok? unless you have strong feelings then i can add it to this work

[DanPaseltiner]

LGTM! Thanks for slogging through on this one.

[robertmitchellv]

@DanPaseltiner @m-goggins i added some changes after Dan approved because i was in the middle of moving some things around to make it easier to read assets from the different places in the tests so want to make sure you both have a chance to weigh in before i merge