Running examples in 'STvEA-Ex.R' failed

could not find function "hello"

R CMD check found ERRORs

Process completed with exit code 1.

Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v2, r-lib/actions/setup-r@v1, r-lib/actions/setup-pandoc@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2, r-lib/actions/setup-r@v1, r-lib/actions/setup-pandoc@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

r-lib/actions/setup-r@v1 is deprecated. Please update your workflow to use the 'v2' version. Also look at the examples at https://github.com/r-lib/actions/tree/v2/examples because '@v2' workflows are much simpler than 'v1' workflows.

The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/

unable to access index for repository https://bioconductor.org/packages/3.17/data/annotation/bin/windows/contrib/4.3:

unable to access index for repository https://bioconductor.org/packages/3.17/data/experiment/bin/windows/contrib/4.3:

unable to access index for repository https://bioconductor.org/packages/3.17/workflows/bin/windows/contrib/4.3:

r-lib/actions/setup-pandoc@v1 is deprecated. Please update your workflow to use the 'v2' version.

'::' or ':::' import not declared from: 'Seurat'

Undocumented code objects:

Functions or methods with usage in documentation object 'hello' but not in code:

Undocumented arguments in documentation object 'ConstructNNMat'

Files not of a type allowed in a 'data' directory:

LazyData DB of 14.7 MB without LazyDataCompression set