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rSWeeP is an alignment-free method for the vector representation of the biological sequences (amino acid and nucleotide).

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README rSWeeP

The current release can be installed from Bioconductor:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("rSWeeP")

See the website for additional information and tutorials.

Citation

Please cite this package as follows:

De Pierri, Camilla Reginatto, Ricardo Voyceik, Letı́cia Graziela Costa Santos de Mattos, Mariane Gonçalves Kulik, Josué Oliveira Camargo, Aryel Marlus Repula de Oliveira, Bruno Thiago de Lima Nichio, et al. 2020. “SWeeP: Representing Large Biological Sequences Datasets in Compact Vectors.” Scientific Reports 10 (1): 1–10. (URL: https://doi.org/10.1038/s41598-019-55627-4).

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rSWeeP is an alignment-free method for the vector representation of the biological sequences (amino acid and nucleotide).

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