Ubuntu 20.04
Beth Cimini edited this page Sep 11, 2020
·
4 revisions
The following instructions were used to build CellProfiler 4.0.0rc12 on a new AWS Ubuntu 20.04 machine (ami-0758470213bdd23b1)
sudo apt update
sudo apt -y upgrade
sudo apt install -y make gcc build-essential libgtk-3-dev
sudo apt-get install -y python3-pip openjdk-11-jdk-headless default-libmysqlclient-dev libnotify-dev libsdl2-dev
#If and only if you are building your wxPython not from a wheel, you may need the following libraries:
#Otherwise, skip to the "export" steps
sudo apt-get install -y \
freeglut3 \
freeglut3-dev \
libgl1-mesa-dev \
libglu1-mesa-dev \
libgstreamer-plugins-base1.0-dev \
libgtk-3-dev \
libjpeg-dev \
libnotify-dev \
libsdl2-dev \
libsm-dev \
libtiff-dev \
libwebkit2gtk-4.0-dev \
libxtst-dev
export JAVA_HOME=/usr/lib/jvm/java-11-openjdk-amd64
export PATH=$PATH:/home/ubuntu/.local/bin
wget https://extras.wxpython.org/wxPython4/extras/linux/gtk3/ubuntu-20.04/wxPython-4.1.0-cp38-cp38-linux_x86_64.whl
pip3 install wxPython-4.1.0-cp38-cp38-linux_x86_64.whl
git clone https://github.com/CellProfiler/CellProfiler.git
cd CellProfiler
pip3 install .
- Linux
- MacOS M1 source installation
- macOS and OS X
- Opening CellProfiler on Mac OS 10.15.7
- Ubuntu 20.04
- Ubuntu 18.04
- Ubuntu 16.04 LTS
- Windows
- Conda
- Arch Linux
- CellProfiler as a Python package
- Interfacing with other software
- OMERO: Accessing images from CellProfiler
- Getting started using CellProfiler from the command line
- Adapting CellProfiler to a LIMS environment
- s3
- Plugins
- RunImageJMacro
- Orientation to CellProfiler code
- Module structure and data storage retrieval
- Concurrency Model - Analysis Mode and ZMQ Interfaces
- Issues