Version 2.1.1

This is a release that tracks updates to the locus/motif list. The new version has 1,243,954 loci in GRCh38, and 1,175,953 loci for CHM13. The majority of new loci relative to v2.0 are in mobile elements.

Extended-locus release

This update references 1243954 loci on GRCh38 and 1175953 loci on CHM13.

Version 1.3.8

Not changing version since this just updates the makefile.

Bug fix for first region in each file.

This fixes a bug where the first tandem repeat on each chromosome was output as a deletion.

Fixed printing help

Now prints help with empty command line, and exits with success.

Fixing errors from 1.3

Fixes:

• Memory leak
• Incorrect read assignment for het strs
• conda build.

Bug fix release for 1.3

This fixes some memory leaks and data flow errors introduced in the first version that supported STR annotations.

This fix annotates full deletions of tandem repeat loci as DEL in the output.

Release 1.3.0

This release supports 811,236 STR loci. The STR loci are defined as RepeatMasker simple repeat tracks with motif sizes <= 6 bp.
Motifs are taken directly from RepeatMasker annotations with a union across HGSVC and HPRC genomes. No efficient motif calculation
is used for STR loci.

Furthermore, this release supports considerably faster IO for both contig and read mode tandem repeat calling.

Bump

Bump

updating PREVIX variable for abpoa build

Make abpoa build in place