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Contributing

Contributions are welcome, and they are greatly appreciated! Every little bit helps, and credit will always be given.

You can contribute in many ways:

Types of Contributions

Report Problems

Report problems with the metabolic model at https://github.com/ChristianLieven/memote-e-coli/issues.

If you are reporting a problem, please include:

  • Your operating system name and version.
  • Any details about your local setup that might be helpful in troubleshooting, such as cobrapy version, memote version.
  • Detailed steps to reproduce the problem.

Fix Problems

Look through the GitHub issues for bugs. Anything tagged with "bug" is open to whoever wants to implement it.

Implement Features

Look through the GitHub issues for features. Anything tagged with "feature" is open to whoever wants to implement it.

Write Documentation

memote-e-coli could always use more documentation, whether as part of the official memote-e-coli docs, in docstrings, or even on the web in blog posts, articles, and such.

Submit Feedback

The best way to send feedback is to file an issue at https://github.com/ChristianLieven/memote-e-coli/issues.

If you are proposing a feature:

  • Explain in detail how it would work.
  • Keep the scope as narrow as possible, to make it easier to implement.
  • Remember that this is a volunteer-driven project, and that contributions are welcome :)

Get Started!

Ready to contribute? Here's how to set up memote-e-coli for local development.

  1. Fork the memote-e-coli repo on GitHub.

  2. Clone your fork locally:

    $ git clone git@github.com:your_name_here/memote-e-coli.git

  3. Install your local copy into a virtualenv. Assuming you have virtualenvwrapper installed, this is how you set up your fork for local development:

    $ mkvirtualenv memote-e-coli
$ cd memote-e-coli/
$ pip install -e .

  4. Create a branch for local development:

    $ git checkout -b name-of-your-bugfix-or-feature

    Now you can make your changes locally.

  5. When you're done making changes, check that your changes pass the memote test suite:

    $ memote memote-e-coli

  6. Commit your changes and push your branch to GitHub:

    $ git add .
$ git commit -m "Your detailed description of your changes."
$ git push origin name-of-your-bugfix-or-feature

  7. Submit a pull request through the GitHub website.

Pull Request Guidelines

Before you submit a pull request, check that it meets these guidelines:

  1. The pull request should pass the memote test suite.