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  1. nf-humann nf-humann Public

    Nextflow workflow running the HUMAnN metagenomic analysis tool

    Nextflow 2

  2. Cirro-client Cirro-client Public

    Python SDK to interact with Cirro

    Python 1

  3. Cirro-Annotation Cirro-Annotation Public

    Project to export HDF content as Parquet for Cirro

    Python 1

  4. nf-arcashla nf-arcashla Public

    Nextflow workflow to perform HLA typing from RNAseq data (arcasHLA)

    Nextflow 1

  5. ampliseq ampliseq Public

    Forked from nf-core/ampliseq

    Amplicon sequencing analysis workflow using DADA2 and QIIME2

    Nextflow

  6. nfcore-test-datasets nfcore-test-datasets Public

    Forked from nf-core/test-datasets

    Test data to be used for automated testing with the nf-core pipelines

Repositories

Showing 10 of 16 repositories
  • Cirro-client-ts Public

    API client for TypeScript

    CirroBio/Cirro-client-ts’s past year of commit activity
    TypeScript 0 0 0 0 Updated Jun 25, 2024
  • Cirro-client Public

    Python SDK to interact with Cirro

    CirroBio/Cirro-client’s past year of commit activity
    Python 1 MIT 0 5 0 Updated May 28, 2024
  • nf-differential-abundance Public

    Nextflow workflow for differential abundance analysis

    CirroBio/nf-differential-abundance’s past year of commit activity
    R 0 0 0 0 Updated May 24, 2024
  • nf-xenium-ranger Public

    Nextflow workflow running Xenium Ranger

    CirroBio/nf-xenium-ranger’s past year of commit activity
    Nextflow 0 0 0 0 Updated May 22, 2024
  • nf-samestr Public

    Nextflow workflow running samestr for comparing bacterial strains across metagenomes

    CirroBio/nf-samestr’s past year of commit activity
    Nextflow 0 0 0 0 Updated May 13, 2024
  • Cirro-client-python Public

    API client for Python

    CirroBio/Cirro-client-python’s past year of commit activity
    Python 0 0 0 1 Updated May 9, 2024
  • ww-vc-trio Public Forked from getwilds/ww-vc-trio

    Variant calling WDL workflow using a trio of variant callers and analyzing consensus among them

    CirroBio/ww-vc-trio’s past year of commit activity
    WDL 0 MIT 2 0 0 Updated May 6, 2024
  • nf-sourmash Public

    Nextflow workflow running sourmash

    CirroBio/nf-sourmash’s past year of commit activity
    Nextflow 0 0 0 0 Updated Apr 17, 2024
  • nf-humann Public

    Nextflow workflow running the HUMAnN metagenomic analysis tool

    CirroBio/nf-humann’s past year of commit activity
    Nextflow 2 0 0 0 Updated Jan 5, 2024
  • Cirro-Annotation Public

    Project to export HDF content as Parquet for Cirro

    CirroBio/Cirro-Annotation’s past year of commit activity
    Python 1 MIT 0 0 1 Updated Nov 30, 2023
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