🦨 v0.92.0

Oceananigans v0.92.0

Diff since v0.91.15

Merged pull requests:

• (0.92.0) Make RungeKutta3 the default time-stepper for NonhydrostaticModel (#3580) (@glwagner)
• Change default hydrostatic_pressure_anomaly to CenterField(grid) in NonhydrostaticModel (#3796) (@xkykai)

Closed issues:

• Spurious large-scale flow develops in a supposed quiescent flow when using a buoyancy model (#3795)

v0.91.15

Oceananigans v0.91.15

Diff since v0.91.14

Merged pull requests:

• Add ImmersedPressureSolver with FFTBasedPoissonSolver as preconditioner for complex domains (#3188) (@xkykai)
• Fix a bug in the adapt of PartialCellBottom (#3682) (@simone-silvestri)
• Enable direct FieldTimeSeries forcing (#3760) (@simone-silvestri)
• CompatHelper: bump compat for Enzyme in [weakdeps] to 0.13, (keep existing compat) (#3782) (@github-actions[bot])
• (0.91.15) Make GPUAdaptedFieldTimeSeries an AbstractField with Nothing grid (#3790) (@glwagner)
• Remove vestigial immersed_boundary from NonhydrostaticModel (#3797) (@glwagner)
• Make vertical line plots in y and z (#3798) (@glwagner)

Closed issues:

• PartialCellBottom needs to be adapted correctly for the GPU when using a HydrostaticFreeSurfaceModel (#3681)
• CUDA illegal memory access during HydrostaticFreeSurfaceModel construction with Float32 and CATKE (#3785)

v0.91.14

Oceananigans v0.91.14

Diff since v0.91.13

Merged pull requests:

• Remove Immersed map from Adapting the ImmersedBoundaryGrid (#3690) (@simone-silvestri)
• Supporting indexing a FieldDataset with a Symbol (#3754) (@ali-ramadhan)
• (0.91.14) Extend Lagrangian advection to immersed grids and add tests (#3765) (@tomchor)
• Add 3-location *nodes functions for ImmersedBoundaryGrid (#3776) (@ali-ramadhan)
• Remove Manifest.toml (#3783) (@glwagner)

Closed issues:

• LagrangianParticles not working with ImmersedGrids (#3761)
• λnodes and φnodes not defined for immersed lat-lon grids (#3771)
• Error when constructing a NetCDFOutputWriter with an immersed lat-lon grid (#3775)

v0.91.13

Oceananigans v0.91.13

Diff since v0.91.12

Merged pull requests:

• Fix typo in the README (#3757) (@glwagner)
• Bump compat entry for CubedSphere (#3763) (@navidcy)
• Fix FieldTimeSeries interpolation for single column grids with x, y locations (#3766) (@glwagner)
• (0.91.13) Use SeawaterPolynomials 0.3.5 (#3767) (@navidcy)

🟥 v0.91.12

Oceananigans v0.91.12

Diff since v0.91.11

Merged pull requests:

• Remove space from doi url (#3734) (@navidcy)
• Fix CFL calculation on flat grids (#3737) (@ali-ramadhan)
• Remove tendency computation at model construction (#3741) (@simone-silvestri)
• Test N-tuple MultipleForcings and make them work on the GPU (#3743) (@ali-ramadhan)
• Bug in the vector rotation operator (#3744) (@simone-silvestri)
• Add node_names and others to ImmersedBoundaryGrid (#3746) (@glwagner)
• Fix auto_extension for short filenames (#3749) (@ali-ramadhan)
• (0.91.12) Fix non-optimal CATKE parameters (#3759) (@glwagner)

Closed issues:

• cell_advection_timescale (and CFL) does not account for Flat topologies (#3679)
• Error when trying to use MultipleForcings (#3736)
• Some problems with ImmersedBoundaryGrids (#3742)
• Should tests be run with julia --check-bounds=yes? (#3747)
• Out of bounds error in auto_extension if output writer filename is 4 characters or shorter (#3748)

v0.91.11

Oceananigans v0.91.11

Diff since v0.91.10

Merged pull requests:

• Nullify preferred axis for field arg (#3730) (@glwagner)
• Bugfix for #3731 (#3733) (@simone-silvestri)

Closed issues:

• Bug with Makie extension (#3727)
• Bug in interpolate!(target_fts::FieldTimeSeries, source_fts::FieldTimeSeries)? (#3731)

v0.91.10

Oceananigans v0.91.10

Diff since v0.91.9

Merged pull requests:

• Make it easier to build simple HydrostaticFreeSurfaceModels (#3620) (@glwagner)
• Bugfix in interpolate! for FieldTimeSeries (#3723) (@simone-silvestri)
• Make the quickstart a bit more fun (#3724) (@glwagner)
• Invoke mask_immersed_field! when converting args for Makie (#3725) (@glwagner)
• Bump patch release (#3729) (@navidcy)

Closed issues:

• Cleanup Doc Previews (#3726)

v0.91.9

Oceananigans v0.91.9

Diff since v0.91.8

Merged pull requests:

• Adds methods to mask_immersed_field! for BinaryOperations (#3683) (@jagoosw)
• Fixs fallback for AbstractContinuousFormBiogeochemistry (#3685) (@jagoosw)
• Restrict LatitudeLongitueGrid topologies (#3694) (@glwagner)
• Use the word "grid" in the grid tutorial (#3713) (@glwagner)
• Add extension feature for plotting fields when nodes are provided (#3715) (@glwagner)
• (0.91.9) Bumps patch number (#3722) (@jagoosw)

Closed issues:

• minimum_zspacing isn't working on the GPU (#3040)
• maximum(abs, v) doesn't work on GPU in Julia 1.10.0 with grid size larger than (10, 10, 10) (#3427)

v0.91.8

Oceananigans v0.91.8

Diff since v0.91.7

Merged pull requests:

• Add new constructor for KernelParameters (#3645) (@glwagner)
• The start of documentation 2.0 (#3673) (@glwagner)
• Add constructor for windowing nothing boundary conditions (#3688) (@glwagner)
• Distributed tridiagonal Fourier solver (#3689) (@simone-silvestri)
• Create a warning for using the NonhydrostaticModel on ImmersedBoundaryGrid and change the default treatment of hydrostatic pressure anomaly (#3692) (@glwagner)
• Go back to support BoundaryCondition(Classification, args...) (#3695) (@simone-silvestri)
• Disambiguate tracer fluxes on an immersed boundary (#3696) (@simone-silvestri)
• Make shading better in baroclinic_adjustment.jl (#3697) (@asinghvi17)
• Leverage Makie extension in quick start (#3700) (@glwagner)
• Add Chor & Wenegrat (2024) in papers using package list (#3706) (@navidcy)
• (0.91.8) bug fix release (#3709) (@simone-silvestri)

Closed issues:

• Outdated docs on background diffusivity/viscosity (#3649)
• view fails on a Field indexed from FieldTimeSeries (#3687)

v0.91.7

Oceananigans v0.91.7

Diff since v0.91.6

This PR implements the infrastructure for open boundaries in NonhydrostaticModels by differentiating the filling of halos for BoundaryCondition{Open} boundaries so they are not refilled after the pressure correction step, as this would result in the interior field becoming divergent. This means that if the boundary value is not known a priori (e.g. it depends on the interior values), then the condition will not be enforced exactly. However, since open boundary conditions are already unphysical, it was decided that this was the preferable non-physicality.

To allow more sophisticated boundary conditions this PR adds a matching_scheme property to the Open boundary classification, and as an example, a matching scheme named FlatExtrapolation is implemented.

Finally, it introduces update_boundary_condition!(boundary_condition, field, model) which can be dispatched on boundary_condition to allow more complex boundary conditions to be implemented (e.g. to compute the mean outflow at the boundary and store it in the condition).

Merged pull requests:

• (0.91.7) Open boundary conditions for NonhydrostaticModel (#3482) (@jagoosw)
• Implement Makie extension (#3686) (@glwagner)

Closed issues:

• Adding Makie extension (#3178)