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- psga-pipeline-sars-cov-2 Public
Repository for Pathogen Sequence Genome Analysis Sars CoV 2 pipeline
Congenica/psga-pipeline-sars-cov-2’s past year of commit activity - msisensor2 Public Forked from niu-lab/msisensor2
Microsatellite instability (MSI) detection for tumor only data.
Congenica/msisensor2’s past year of commit activity - ncov2019-artic-nf Public Forked from connor-lab/ncov2019-artic-nf
A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), with a focus on ncov2019
Congenica/ncov2019-artic-nf’s past year of commit activity - pysam Public Forked from pysam-developers/pysam
Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.
Congenica/pysam’s past year of commit activity - clinvar Public Forked from macarthur-lab/clinvar
This repo provides tools to convert ClinVar data into a tab-delimited flat file, and also provides that resulting tab-delimited flat file.
Congenica/clinvar’s past year of commit activity - cyvcf Public Forked from bunop/cyvcf
A fast Python library for VCF files leveraging Cython for speed.
Congenica/cyvcf’s past year of commit activity
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