fqfa

A pure Python library for handling FASTQ and FASTA files.

Install fqfa from PyPI using pip:

pip3 install fqfa

To set up the package for development purposes, include the optional dependencies and install pre-commit:

pip3 install fqfa[dev]
pre-commit install

Building the documentation requires the following additional packages:

pip3 install sphinx
pip3 install sphinx-rtd-theme

Online documentation including usage examples is available on Read the Docs.

To report a problem or request a new feature, please use the GitHub issue tracker.

To cite this package please refer to "fqfa: A pure Python package for genomic sequence files".

Contributions via pull request are welcome. Contributed code should have full unit test coverage, NumPy-style docstrings, black formatting, and type hints.