-
Notifications
You must be signed in to change notification settings - Fork 0
J. Li, A. Shariff, M. Wiking, E. Lundberg, G.K. Rohde and R.F. Murphy (2012) Estimating microtubule distributions from 2D immunofluorescence microscopy images reveals differences among human cultured cell lines. PLoS ONE 7:e0050292.
License
DanielLAL24/murphylab189
Folders and files
Name | Name | Last commit message | Last commit date | |
---|---|---|---|---|
Repository files navigation
README ====== This source code contains the neccesary information to generate the figures and tables from the article Jieyue Li, Aabid Shariff, Mikaela Wiking, Emma Lundberg, Gustavo K. Rohde and Robert F. Murphy. Estimating microtubule distributions from 2D immunofluorescence microscopy images reveals differences among human cultured cell lines. PLoS ONE (2012). To download the source code, raw data and intermediate results manually, please visit http://murphylab.web.cmu.edu/software/2012_PLoS_ONE_Microtubule_Models/ To download the original papaer, please visit http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0050292 Downlading the Source Code ========================== You can download the latest stable copy of the source code from http://murphylab.web.cmu.edu/software/2012_PLoS_ONE_Microtubule_Models/CellLines_Code.tgz You can download the source code directly using a web-browser. From terminal you can use wget -nc http://murphylab.web.cmu.edu/software/2012_PLoS_ONE_Microtubule_Models/CellLines_Code.tgz tar -xvf http://murphylab.web.cmu.edu/software/2012_PLoS_ONE_Microtubule_Models/CellLines_Code.tgz cd CellLines Or you can get a copy of the source code repository from (not guaranteed to be stable) https://bitbucket.org/icaoberg/murphylab189 You can download the repository using git. From terminal you can use git clone https://icaoberg@bitbucket.org/icaoberg/murphylab189.git cd murphyabl189 Comments: the first stable version of the source was tested in CentOS using Matlab 2007a. Older versions of the source code might not run in newer versions of Matlab. Recreating Results from Raw Image Data -------------------------------------- To recreate the results from the article from intermediate results download the source code and use the run.m script to generate the results. For example, in Ubuntu, start Matlab and run icaoberg@developers:~$ matlab Warning: No display specified. You will not be able to display graphics on the screen. < M A T L A B (R) > Copyright 1984-2011 The MathWorks, Inc. R2011b (7.13.0.564) 64-bit (glnxa64) August 13, 2011 To get started, type one of these: helpwin, helpdesk, or demo. For product information, visit www.mathworks.com. >> run() or icaoberg@developers:~$ matlab Warning: No display specified. You will not be able to display graphics on the screen. < M A T L A B (R) > Copyright 1984-2011 The MathWorks, Inc. R2011b (7.13.0.564) 64-bit (glnxa64) August 13, 2011 To get started, type one of these: helpwin, helpdesk, or demo. For product information, visit www.mathworks.com. >> run('scratch') Recreating Results from Intermediate Results --------------------------------------------- To recreate the results from the article from intermediate results download the source code and use the run.m script to generate the results. For example, in Ubuntu, start Matlab and run icaoberg@developers:~$ matlab Warning: No display specified. You will not be able to display graphics on the screen. < M A T L A B (R) > Copyright 1984-2011 The MathWorks, Inc. R2011b (7.13.0.564) 64-bit (glnxa64) August 13, 2011 To get started, type one of these: helpwin, helpdesk, or demo. For product information, visit www.mathworks.com. >> run('intermediate')
About
J. Li, A. Shariff, M. Wiking, E. Lundberg, G.K. Rohde and R.F. Murphy (2012) Estimating microtubule distributions from 2D immunofluorescence microscopy images reveals differences among human cultured cell lines. PLoS ONE 7:e0050292.
Resources
License
Stars
Watchers
Forks
Releases
No releases published
Packages 0
No packages published