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LowRankGraphQuilting

This package implements the Low Rank Graphing Quilting procedures.

Requirements

  • MATLAB 9.6+
  • R 4.1.0+
    • huge package, 1.3.0+

Usage

The primary analysis pipeline can be run using the code found in LRGQ_master.m. This script is divided in to two parts:

  • Generation of synthetic data used for simulation studies.
  • LRGQ estimation procedure, with covariance imputation in Matlab and graphical model selection in R.
    • Requires: K x o table of features in each block, observed covariance matrix.

Links to sample calcium imaging data sets are found in LinksToPublicDataSets.txt.

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