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22nd October 2020
Alex Grimwood AG
Zac Baum ZB
Stefano Blumberg SB
Ester Bonmati EB
Adria Casamitjana AC
Matt Clarkson MC
Yunguan Fu YF
Yipeng Hu YH
Zhe Min ZM
Nina Montana Brown NB
Remi Delauny RD
Shaheer Saeed SS
Qianye Yang QY
Mark Pinnock MP
JOSS paper review
More Housekeeping Following on from last week’s meeting
YH: 1 reviewer accepted, 2 reviewers provided no feedback
NB: next steps?
YH: if no response, new reviewers will need to be sourced - please send reviewer suggestions to JOSS!
397 Dependency on cloned repo
ZB: on hold
406 Branch merging guidelines
YH: examine user-level compatibility (i.e. if user behaviour requires a change, there must be a dev-level discussion)
YH: communication and initiative from core devs is required for potentially disruptive updates
YH: Informational tickets should be generated approximating release notes where substantial changes have been made
MC, ZB, YF: Counter-suggestion is to enforce good practice when approving PRs and ensuring release notes are comprehensive/fit-for-purpose
446 Preprocessing tool
YH: Feature request from user, unassigned and in need of a lead to research and recommend implementation
SB: Data augmentation required?
YF: Happy to implement on the fly pre-processing, offline pre-processing is low priority
YH: will split ticket into 2 (online & offline)
324 Deepreg.net revamp
ZB: Urges further contributions if there are any outstanding and is ready to go ahead with incorporating content already submitted to ticket
ZB: will present a simple landing page in collaboration with SS
424 New dev avenues (Research)
YH: Any further suggestions? Please could someone summarise?
NB: GANs (multimodal to unimodal registration), tools, PyTorch extension
YH: PyTorch is lower priority due to resource/time demands
ZB: Slicer integration - will create ticket
NB: establish consistent format/layout of visualisations using SS’s tool - will create ticket
SS: tools to include hyperparameter tuning - will raise ticket
NB: ZB’s freepoint transform? ZB to raise ticket for discussion with YH
YF: contrastive learning? YH, SB: still in early stages
YF: Any issues with precommit?
ZB: struggles on Windows
tables: for google docs --> markdown, use tablesgenerator.org
formatting: for google docs --> markdown, use stackedit