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Merge pull request #31 from DenisTitovLab:correct-more-hk1-typos
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correct positional args typoes for hk1
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@Denis-Titov
Denis-Titov authored Mar 5, 2024
2 parents 8a4fbb3 + a7c5430 commit 450a966
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Showing 2 changed files with 4 additions and 4 deletions.
2 changes: 1 addition & 1 deletion Project.toml
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Original file line number Diff line number Diff line change
@@ -1,7 +1,7 @@
name = "Glycolysis"
uuid = "1acb6d80-f93a-4117-912f-ae4c0dd090a6"
authors = ["Denis-Titov <titov@berkeley.edu> and contributors"]
version = "0.6.3"
version = "0.6.4"

[deps]
LabelledArrays = "2ee39098-c373-598a-b85f-a56591580800"
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6 changes: 3 additions & 3 deletions src/helper_functions.jl
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Original file line number Diff line number Diff line change
Expand Up @@ -19,7 +19,7 @@ function conc_to_rates(s, params)
:ATPase,
)
r.GLUT = rate_GLUT(s.Glucose_media, s.Glucose, params)
r.HK1 = rate_HK1(s.Glucose, s.G6P, s.ATP, s.Phosphate, s.ADP, params)
r.HK1 = rate_HK1(s.Glucose, s.G6P, s.ATP, s.ADP, s.Phosphate, params)
r.GPI = rate_GPI(s.G6P, s.F6P, params)
r.PFKP = rate_PFKP(s.F6P, s.ATP, s.F16BP, s.ADP, s.Phosphate, s.Citrate, s.F26BP, params)
r.ALDO = rate_ALDO(s.F16BP, s.GAP, s.DHAP, params)
Expand All @@ -32,7 +32,7 @@ function conc_to_rates(s, params)
r.LDH = rate_LDH(s.Pyruvate, s.NADH, s.NAD, s.Lactate, params)
r.MCT = rate_MCT(s.Lactate, s.Lactate_media, params)
r.ATPprod = (
-rate_HK1(s.Glucose, s.G6P, s.ATP, s.Phosphate, s.ADP, params) -
-rate_HK1(s.Glucose, s.G6P, s.ATP, s.ADP, s.Phosphate, params) -
rate_PFKP(s.F6P, s.ATP, s.F16BP, s.ADP, s.Phosphate, s.Citrate, s.F26BP, params) +
rate_PGK(s.BPG, s.ADP, s.ATP, s.ThreePG, params) +
rate_PKM2(s.PEP, s.ADP, s.Pyruvate, s.ATP, s.F16BP, s.Phenylalanine, params) +
Expand Down Expand Up @@ -228,4 +228,4 @@ function free_to_bound_conc(f, params)
b.Phenylalanine =
(binding_PKM2(f.PEP, f.ADP, f.Pyruvate, f.ATP, f.F16BP, f.Phenylalanine, params).Phenylalanine)
return b
end
end

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Registration pull request created: JuliaRegistries/General/102279

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Release notes:

## Breaking changes

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To add them here just re-invoke and the PR will be updated.

Tagging

After the above pull request is merged, it is recommended that a tag is created on this repository for the registered package version.

This will be done automatically if the Julia TagBot GitHub Action is installed, or can be done manually through the github interface, or via:

git tag -a v0.6.4 -m "<description of version>" 450a966e6c67f7a0260a3afce2eb4ad27643baae
git push origin v0.6.4

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