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fix GAPDH binding equations #35

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merged 2 commits into from
Apr 12, 2024
Merged

fix GAPDH binding equations #35

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738f65e
fix GAPDH binding equations
Denis-Titov Apr 12, 2024
94e699a
bump version
Denis-Titov Apr 12, 2024
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2 changes: 1 addition & 1 deletion Project.toml
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Original file line number Diff line number Diff line change
@@ -1,7 +1,7 @@
name = "Glycolysis"
uuid = "1acb6d80-f93a-4117-912f-ae4c0dd090a6"
authors = ["Denis-Titov <titov@berkeley.edu> and contributors"]
version = "0.7.2"
version = "0.7.3"

[deps]
LabelledArrays = "2ee39098-c373-598a-b85f-a56591580800"
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6 changes: 3 additions & 3 deletions src/enzyme_binding.jl
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Expand Up @@ -265,7 +265,7 @@ function binding_GAPDH(metabs, params)
metabs.NADH / params.GAPDH_K_i_NADH * (
1 +
metabs.GAP / params.GAPDH_K_GAP * (1 + metabs.Phosphate / params.GAPDH_K_i_Phosphate) +
metabs.BPG / (params.GAPDH_β_i_BPG * params.GAPDH_K_BPG)
params.GAPDH_β_i_BPG * metabs.BPG / (params.GAPDH_K_BPG)
)
Z = (Z_a^4 + params.GAPDH_L * Z_i^4)
GAP_bound =
Expand Down Expand Up @@ -326,7 +326,7 @@ function binding_GAPDH(metabs, params)
(
1 +
metabs.NAD / params.GAPDH_K_i_NAD +
metabs.NADH / (params.GAPDH_β_i_BPG * params.GAPDH_K_i_NADH)
mparams.GAPDH_β_i_BPG * etabs.NADH / (params.GAPDH_K_i_NADH)
) *
(1 + metabs.Phosphate / params.GAPDH_K_i_Phosphate) *
Z_i^3
Expand All @@ -347,7 +347,7 @@ function binding_GAPDH(metabs, params)
(
1 +
metabs.GAP / params.GAPDH_K_GAP * (1 + metabs.Phosphate / params.GAPDH_K_i_Phosphate) +
metabs.BPG / (params.GAPDH_β_i_BPG * params.GAPDH_K_BPG)
params.GAPDH_β_i_BPG * metabs.BPG / (params.GAPDH_K_BPG)
) *
Z_i^3
)
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