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replicate handling #15

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magruca opened this issue Apr 2, 2019 · 3 comments
Open

replicate handling #15

magruca opened this issue Apr 2, 2019 · 3 comments
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enhancement New feature or request

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@magruca
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magruca commented Apr 2, 2019

It would be easy enough to add a feature to handle replicates in the process_atac side of things... probably something to consider in the near future.

@magruca magruca added the enhancement New feature or request label Apr 2, 2019
@ignaciot
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ignaciot commented Apr 2, 2019

I wonder if it would be better to just use something like DEseq2 beforehand, to aggregate replicates. But I may be wrong. Just making sure we're not reinventing the wheel if there's another package that takes care of every corner case. It would be nice to keep all in one Python pipeline, though...

@tiagobrc
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I agree, with the replicate handling. Now I am doing using overlapped peaks.

@magruca
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magruca commented Jun 20, 2019

We have something else that we're developing in our lab that will be used as a separate tool for this issue. I will post is here and close the issue when it's released.

@magruca magruca self-assigned this Jun 20, 2019
@magruca magruca removed their assignment Apr 16, 2020
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