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Apologies that does need to be added to the documentation. In order:
motif \t total number of motif hits \t number of hits in sample 1 \t number of hits in sample 2 \ md score sample 1 \t md score sample 2 \t differential md score
Thanks, Margaret! Just an update, there's a column missing in the above description (2nd column), which is the p-value (which is 1.0 in the example rows Toby cited, meaning those are insignificant changes). I'll update the README with the new column description.
Hi,
Thanks for the great package!
I just wanted to ask, what are the output columns from the
differential_md_score
function please?e.g.
`
V1 V2 V3 V4 V5 V6 V7 V8
1 CTCF_HUMAN.H11MO.0.A 1 123467 13580 13580 0.574 0.574 0
2 JUN_HUMAN.H11MO.0.A 1 71882 584 584 0.538 0.538 0
3 JUND_HUMAN.H11MO.0.A 1 77086 1138 1138 0.525 0.525 0
4 FOSL2_HUMAN.H11MO.0.A 1 77543 1024 1024 0.484 0.484 0
5 NF2L2_HUMAN.H11MO.0.A 1 84127 1043 1043 0.481 0.481 0
6 BACH2_HUMAN.H11MO.0.A 1 86993 1314 1314 0.472 0.472 0`
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