Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Columns produced by differential_md_score function #29

Closed
TobyGurran opened this issue Feb 7, 2020 · 3 comments
Closed

Columns produced by differential_md_score function #29

TobyGurran opened this issue Feb 7, 2020 · 3 comments
Assignees

Comments

@TobyGurran
Copy link

TobyGurran commented Feb 7, 2020

Hi,

Thanks for the great package!

I just wanted to ask, what are the output columns from the differential_md_score function please?

e.g.

`
V1 V2 V3 V4 V5 V6 V7 V8

1 CTCF_HUMAN.H11MO.0.A 1 123467 13580 13580 0.574 0.574 0

2 JUN_HUMAN.H11MO.0.A 1 71882 584 584 0.538 0.538 0

3 JUND_HUMAN.H11MO.0.A 1 77086 1138 1138 0.525 0.525 0

4 FOSL2_HUMAN.H11MO.0.A 1 77543 1024 1024 0.484 0.484 0

5 NF2L2_HUMAN.H11MO.0.A 1 84127 1043 1043 0.481 0.481 0

6 BACH2_HUMAN.H11MO.0.A 1 86993 1314 1314 0.472 0.472 0`

@magruca magruca self-assigned this Feb 7, 2020
@magruca
Copy link
Collaborator

magruca commented Feb 7, 2020

Apologies that does need to be added to the documentation. In order:
motif \t total number of motif hits \t number of hits in sample 1 \t number of hits in sample 2 \ md score sample 1 \t md score sample 2 \t differential md score

@TobyGurran
Copy link
Author

Perfect! Thanks very much :-)

@ignaciot
Copy link
Collaborator

ignaciot commented Feb 7, 2020

Thanks, Margaret! Just an update, there's a column missing in the above description (2nd column), which is the p-value (which is 1.0 in the example rows Toby cited, meaning those are insignificant changes). I'll update the README with the new column description.

@ignaciot ignaciot closed this as completed Feb 7, 2020
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Projects
None yet
Development

No branches or pull requests

3 participants