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Issue while trying to generate MA plot and barcode plot. PLEASE HELP! #36

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Divya6805 opened this issue Nov 25, 2023 · 3 comments
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@Divya6805
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Another error encountered with different files! I am trying to analyze ATAC-seq data for the first time and would appreciate timely help.
Screenshot 2023-11-25 122003

@ignaciot
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This one looks like an argument that got deprecated in the later versions of matplotlib, the library used to generate figures. Should be an easy fix, in the meantime you can downgrade to an older version. E.g.,

$ pip uninstall matplotlib
$ pip install matplotlib==3.5.1

@Divya6805
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Thank you ! I had changed from basex= 2 to base =2 in line 298 in differential_md_score.py and it worked.

@ignaciot ignaciot self-assigned this Dec 21, 2023
@ignaciot
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Changed this in the code to support the later matplotlib versions.

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