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tf_result_explanations error #37

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sngholee opened this issue Jan 3, 2024 · 2 comments
Closed

tf_result_explanations error #37

sngholee opened this issue Jan 3, 2024 · 2 comments

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@sngholee
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sngholee commented Jan 3, 2024

Hello,

I ran process_atac on my ATAC seq files, and then differential_md_score. Those seem to have run fine. But when I run tf_result_explanations, I get the below error. I used the HOCOMOCO preprocessed mm10 motifs file. I would appreciate any help on getting this to work.

Traceback (most recent call last): File "/public/home/slee393/miniconda3/bin/differential_md_score", line 8, in <module> sys.exit(differential_md_score()) ^^^^^^^^^^^^^^^^^^^^^^^ File "/public/home/slee393/miniconda3/lib/python3.11/site-packages/DAStk/__init__.py", line 12, in differential_md_score d.main() File "/public/home/slee393/miniconda3/lib/python3.11/site-packages/DAStk/differential_md_score.py", line 273, in main adjust_text(texts, force_points=1, expand_points=(2,2), expand_text=(2,2), arrowprops=dict(arrowstyle="-", lw=1, color='black', alpha=0.8)) File "/public/home/slee393/miniconda3/lib/python3.11/site-packages/adjustText/__init__.py", line 567, in adjust_text transform = texts[0].get_transform() ~~~~~^^^ IndexError: list index out of range

@ignaciot
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Hi there, this seems like a duplicate of a recent usability issue that was fixed (this is most likely because none of the motifs presents a significant p-value with the default threshold which is rather stringent, so you can try passing a different p-value threshold with the corresponding command line argument).

@ignaciot ignaciot closed this as not planned Won't fix, can't repro, duplicate, stale Jan 11, 2024
@ignaciot
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Duplicate of Issue #35.

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