You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
I have two suggested improvements for the differential MDS portion of DAStk, although the first could also be applied to the MDS calculation in process_atac
It would be nice to have a specified output directory
It would be helpful to have a .bed/.txt file (or really whatever tab/comma delimited file) that outputs the MDS and p-values for all motif calls between input conditions, significant or not, as well as the actual differential MD score displayed in the MD plot
The text was updated successfully, but these errors were encountered:
It would be nice to not have to specify a prefix as it would be easier to integrate into the Nextflow pipeline. I understand the purpose of having the prefix, but for running all of the Nascent data, it would be easier to leave the SRR as the rootname
In GitLab by @magr0763 on Nov 7, 2018, 11:15
I have two suggested improvements for the differential MDS portion of DAStk, although the first could also be applied to the MDS calculation in
process_atac
It would be nice to have a specified output directory
It would be helpful to have a .bed/.txt file (or really whatever tab/comma delimited file) that outputs the MDS and p-values for all motif calls between input conditions, significant or not, as well as the actual differential MD score displayed in the MD plot
The text was updated successfully, but these errors were encountered: