taxonomyCleanr is a user friendly workflow and collection of functions to help you:
- Identify and correct misspelled taxa
- Resolve taxa to an authority (e.g. Integrated Taxonomic Information System (ITIS))
- Get hierarchical rank values
- Get common names
- Render taxonomic information in the Ecological Metadata Language (EML).
taxonomyCleanr is based on the
taxize R package developed by Chamberlain et al. (2016).
taxonomyCleanr from GitHub
# Install and load devtools install.packages("devtools") library(devtools) # Install and load taxonomyCleanr install_github("EDIorg/taxonomyCleanr") library(taxonomyCleanr)
We welcome contributions of all forms including bug reports, requests for development, and new functionality. Please reference our code conduct and contributing guidelines for submitting pull requests.
Unit tests are found under /tests and follow the
Versioning for the
taxonomyCleanr follows semantic versioning.