protein.fna.rst

protein.fna

The raw output generated by Prodigal.

Produced by

• :ref:`commands/identify`
• :ref:`commands/classify_wf`

Example

>NC_013790.1_3 # 2508 # 4775 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.345
ATGCTTAAAAGAAAGATGCTAAGAGATATTTGGAATTATAAAGTTCAATTTATATCCATTTTCATAATTG
CATTCATAGGCGTATTTGTATTTGCCGGACTGACTGCAGAGGCAGATGGTTTTGAAGCCTCCATAGACTC
ATTTTACCAGAGGAGCAATTTAGCTGACGGATGGATATACTCAAACTATCTTGTTGATGACTTTCTAAAG
CAGGTCTACTTGCTTGGCGCAACCACTAGTATGGAGAGACAGTTGGTTGTAGATTCCCAAGCTGAATTAG
ATGGCAAGCCCGATATTACGCTGCATTTTGTTGAAAACAACACCATATCTAAATATTATCCTCTTGAAGG
CAATGAATTAAATATAAGCGATTCTGAAGGTGTATGGTTAGATAAAACTTTCGCTGATGCTCGAAATCTG
AAGATAGGGGACACCATTGCATTTGAAAGCAATGGAATTAAAATAGAAAAGAAGATTAGGGGATTAGGCT
ATTCTCCAGAGAATGTTTATAGCTTAGTTCCCACTCAAACAGTTCCAAATTATACGGCAAGGGGCTTTGC
TTATATGTCCTATAAGGCATTTCCATCAGACAATATAACTTATAATGTTCTTAATGTTAAGTTTGATGGA
CGCCCTGAAATCTTCTCAGAGCTATTGTCCTATCGTTTAGATGGATATTATGAATTGTATCTGCCCCAAT
>NC_013790.1_4 # 5233 # 7470 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.390
ATGAAAAATCGTATGATTTTAATTATTTCACTATTCCTTATTTCATTACTCGCTATCGGTGCGGCAAGCG
CATCTGAAGACATAACTGATACAATTGAAGCACCTGCTGCTGATGAAGTAGTAACAGTTGATAGTGAAAT
CCAAGAAATAGAAACGGTTGATAATAACCTTGAAGAAATAGAAACCGATACAAATAATATTGAAGAGGTG
GAAGCTGCTGACGATGAAGTCATAAATGAAACAGCTGAAACTGAAATAAAAGACGAAACCGAAATTACAG