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Merge pull request #496 from Ecogenomics/staging
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docs(edit changelog):
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pchaumeil committed Mar 23, 2023
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Change log
==========

2.2.6
-----

Bug Fixes:

* (`#493 <https://github.com/Ecogenomics/GTDBTk/issues/493>`_) Fix issue with --full-tree flag (related to skipping ANI steps)

Minor changes:

* Change URL for documentation to 'https://ecogenomics.github.io/GTDBTk/installing/index.html'
* Improve portability of the ANI_screen step by regenerating the paths of reference genomes in the current filesystem for mash_db.msh


2.2.5
-----

Bug Fixes:
* gtdbtk.json is now reset when the pipeline is re run and the status of ani_Screen is not 'complete'

Minor changes:
* When using '--genes' , ANI steps are skipped and Warnings are raised to the user to
inform them that classification is less accurate.
* (`#486 <https://github.com/Ecogenomics/GTDBTk/issues/486>`_) Environment variables can be used in GTDBTK_DATA_PATH
* 'is_consistent' function in 'mash.py' compares only the filenames, not the full paths
* Add cutoff arguments to PfamScan ( Thanks @AroneyS for the contribution)


2.2.5
-----
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