added overhangs list in sequence cutting report

Edinburgh-Genome-Foundry · Jan 14, 2019 · bfeaa04 · bfeaa04
1 parent 9c81cf9
commit bfeaa04
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diff --git a/.travis.yml b/.travis.yml
@@ -5,7 +5,7 @@ python:
 install:
   - sudo apt-get -qq update
   - sudo apt-get install python-dev swig libxml2-dev zlib1g-dev libgmp-dev
-  - pip install pytest coveralls pytest-cov
+  - pip install pytest coveralls pytest-cov==2.6
   - pip install -e .
 # command to run tests
 script:

diff --git a/goldenhinges/reports.py b/goldenhinges/reports.py
@@ -129,4 +129,8 @@ def write_report_for_cutting_solution(solution, target, sequence,
         sequences.append(";".join([seqname, str(seqrecord.seq)]))
     root._file("fragments_sequences.csv").write("\n".join(sequences))
 
+    root._file('overhangs_list.csv').write(", ".join([
+        o['sequence'] for o in solution
+    ]))
+
     return root._close()