Installation error cause of pyGaussDCA #12
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你好，请问你解决这个问题了吗，我最近也遇到了这个问题 |
Hi, sorry for bothering you. I got the exactly the same isuuse with yours and I wonder if you have found solutions for this environmental issue. Thanks in advance. =) |
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这是我当时配环境做的笔记【pconsc4下载-所需环境配置 - CSDN App】http://t.csdnimg.cn/DkjqF
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…------------------ Original ------------------
From: yuehua-Song666 ***@***.***>
Date: Sat,Jun 22,2024 3:13 AM
To: ElofssonLab/PconsC4 ***@***.***>
Cc: zj223332 ***@***.***>, Comment ***@***.***>
Subject: Re: [ElofssonLab/PconsC4] Installation error cause of pyGaussDCA(Issue #12)
Hello, I got these error during installation of pconsc4. Could anyone can help me?
========Installation info======
pip3 install numpy==1.17.4 pip install --upgrade keras==2.3.1 pip install torch==1.3.0 conda install pytorch==1.3.0 pip install torch_geometric==1.3.2 pip3 install Cython pythran==0.9.5 pip install tensorflow==1.14.0 pip install beniget==0.2.1 pip install gast==0.3.3
pip3 install pconsc4==0.4
Collecting pconsc4==0.4 Using cached pconsc4-0.4-cp37-cp37m-linux_x86_64.whl Requirement already satisfied: keras in ./anaconda3/envs/DGraphDTA/lib/python3.7/site-packages (from pconsc4==0.4) (2.3.1) Requirement already satisfied: Cython in ./anaconda3/envs/DGraphDTA/lib/python3.7/site-packages (from pconsc4==0.4) (3.0.5) Requirement already satisfied: h5py in ./anaconda3/envs/DGraphDTA/lib/python3.7/site-packages (from pconsc4==0.4) (3.8.0) Collecting pyGaussDCA Using cached pyGaussDCA-1.0.tar.gz (3.8 MB) Preparing metadata (setup.py) ... done Requirement already satisfied: scipy in ./anaconda3/envs/DGraphDTA/lib/python3.7/site-packages (from pconsc4==0.4) (1.7.3) Requirement already satisfied: numpy in ./anaconda3/envs/DGraphDTA/lib/python3.7/site-packages (from pconsc4==0.4) (1.17.4) Requirement already satisfied: pyyaml in ./anaconda3/envs/DGraphDTA/lib/python3.7/site-packages (from keras->pconsc4==0.4) (6.0.1) Requirement already satisfied: keras-applications>=1.0.6 in ./anaconda3/envs/DGraphDTA/lib/python3.7/site-packages (from keras->pconsc4==0.4) (1.0.8) Requirement already satisfied: six>=1.9.0 in ./anaconda3/envs/DGraphDTA/lib/python3.7/site-packages (from keras->pconsc4==0.4) (1.16.0) Requirement already satisfied: keras-preprocessing>=1.0.5 in ./anaconda3/envs/DGraphDTA/lib/python3.7/site-packages (from keras->pconsc4==0.4) (1.1.2) Requirement already satisfied: pythran>=0.8.6 in ./anaconda3/envs/DGraphDTA/lib/python3.7/site-packages (from pyGaussDCA->pconsc4==0.4) (0.9.5) Requirement already satisfied: gast>=0.3.0 in ./anaconda3/envs/DGraphDTA/lib/python3.7/site-packages (from pythran>=0.8.6->pyGaussDCA->pconsc4==0.4) (0.3.3) Requirement already satisfied: ply>=3.4 in ./anaconda3/envs/DGraphDTA/lib/python3.7/site-packages (from pythran>=0.8.6->pyGaussDCA->pconsc4==0.4) (3.11) Requirement already satisfied: beniget>=0.2.0 in ./anaconda3/envs/DGraphDTA/lib/python3.7/site-packages (from pythran>=0.8.6->pyGaussDCA->pconsc4==0.4) (0.2.1) Requirement already satisfied: decorator in ./anaconda3/envs/DGraphDTA/lib/python3.7/site-packages (from pythran>=0.8.6->pyGaussDCA->pconsc4==0.4) (5.1.1) Requirement already satisfied: networkx>=2 in ./anaconda3/envs/DGraphDTA/lib/python3.7/site-packages (from pythran>=0.8.6->pyGaussDCA->pconsc4==0.4) (2.6.3) Building wheels for collected packages: pyGaussDCA
error: Command "gcc -pthread -B /mnt/hyojin0912/anaconda3/envs/DGraphDTA/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -DENABLE_PYTHON_MODULE -D__PYTHRAN__=3 -DPYTHRAN_BLAS_BLAS -I/mnt/hyojin0912/anaconda3/envs/DGraphDTA/lib/python3.7/site-packages/pythran -I/mnt/hyojin0912/anaconda3/envs/DGraphDTA/lib/python3.7/site-packages/numpy/core/include -I/mnt/hyojin0912/anaconda3/envs/DGraphDTA/include/python3.7m -c src/gaussdca/_gdca.cpp -o build/temp.linux-x86_64-cpython-37/src/gaussdca/_gdca.o -std=c++11 -fno-math-errno -w -fvisibility=hidden -fno-wrapv -fopenmp -ftree-vectorize" failed with exit status 1 [end of output]
note: This error originates from a subprocess, and is likely not a problem with pip. error: legacy-install-failure
× Encountered error while trying to install package. ╰─> pyGaussDCA
note: This is an issue with the package mentioned above, not pip. hint: See above for output from the failure. `
Hi, sorry for bothering you. I got the exactly the same isuuse with yours and I wonder if you have found solutions for this environmental issue. Thanks in advance. =)
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好的好的，太感谢啦，我去试试～ 👍 |
Hello, I got these error during installation of pconsc4.
Could anyone can help me?
========Installation info======
pip3 install pconsc4==0.4Collecting pconsc4==0.4
Using cached pconsc4-0.4-cp37-cp37m-linux_x86_64.whl
Requirement already satisfied: keras in ./anaconda3/envs/DGraphDTA/lib/python3.7/site-packages (from pconsc4==0.4) (2.3.1)
Requirement already satisfied: Cython in ./anaconda3/envs/DGraphDTA/lib/python3.7/site-packages (from pconsc4==0.4) (3.0.5)
Requirement already satisfied: h5py in ./anaconda3/envs/DGraphDTA/lib/python3.7/site-packages (from pconsc4==0.4) (3.8.0)
Collecting pyGaussDCA
Using cached pyGaussDCA-1.0.tar.gz (3.8 MB)
Preparing metadata (setup.py) ... done
Requirement already satisfied: scipy in ./anaconda3/envs/DGraphDTA/lib/python3.7/site-packages (from pconsc4==0.4) (1.7.3)
Requirement already satisfied: numpy in ./anaconda3/envs/DGraphDTA/lib/python3.7/site-packages (from pconsc4==0.4) (1.17.4)
Requirement already satisfied: pyyaml in ./anaconda3/envs/DGraphDTA/lib/python3.7/site-packages (from keras->pconsc4==0.4) (6.0.1)
Requirement already satisfied: keras-applications>=1.0.6 in ./anaconda3/envs/DGraphDTA/lib/python3.7/site-packages (from keras->pconsc4==0.4) (1.0.8)
Requirement already satisfied: six>=1.9.0 in ./anaconda3/envs/DGraphDTA/lib/python3.7/site-packages (from keras->pconsc4==0.4) (1.16.0)
Requirement already satisfied: keras-preprocessing>=1.0.5 in ./anaconda3/envs/DGraphDTA/lib/python3.7/site-packages (from keras->pconsc4==0.4) (1.1.2)
Requirement already satisfied: pythran>=0.8.6 in ./anaconda3/envs/DGraphDTA/lib/python3.7/site-packages (from pyGaussDCA->pconsc4==0.4) (0.9.5)
Requirement already satisfied: gast>=0.3.0 in ./anaconda3/envs/DGraphDTA/lib/python3.7/site-packages (from pythran>=0.8.6->pyGaussDCA->pconsc4==0.4) (0.3.3)
Requirement already satisfied: ply>=3.4 in ./anaconda3/envs/DGraphDTA/lib/python3.7/site-packages (from pythran>=0.8.6->pyGaussDCA->pconsc4==0.4) (3.11)
Requirement already satisfied: beniget>=0.2.0 in ./anaconda3/envs/DGraphDTA/lib/python3.7/site-packages (from pythran>=0.8.6->pyGaussDCA->pconsc4==0.4) (0.2.1)
Requirement already satisfied: decorator in ./anaconda3/envs/DGraphDTA/lib/python3.7/site-packages (from pythran>=0.8.6->pyGaussDCA->pconsc4==0.4) (5.1.1)
Requirement already satisfied: networkx>=2 in ./anaconda3/envs/DGraphDTA/lib/python3.7/site-packages (from pythran>=0.8.6->pyGaussDCA->pconsc4==0.4) (2.6.3)
Building wheels for collected packages: pyGaussDCA
error: Command "gcc -pthread -B /mnt/hyojin0912/anaconda3/envs/DGraphDTA/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -DENABLE_PYTHON_MODULE -D__PYTHRAN__=3 -DPYTHRAN_BLAS_BLAS -I/mnt/hyojin0912/anaconda3/envs/DGraphDTA/lib/python3.7/site-packages/pythran -I/mnt/hyojin0912/anaconda3/envs/DGraphDTA/lib/python3.7/site-packages/numpy/core/include -I/mnt/hyojin0912/anaconda3/envs/DGraphDTA/include/python3.7m -c src/gaussdca/_gdca.cpp -o build/temp.linux-x86_64-cpython-37/src/gaussdca/_gdca.o -std=c++11 -fno-math-errno -w -fvisibility=hidden -fno-wrapv -fopenmp -ftree-vectorize" failed with exit status 1
[end of output]
note: This error originates from a subprocess, and is likely not a problem with pip.
error: legacy-install-failure
× Encountered error while trying to install package.
╰─> pyGaussDCA
note: This is an issue with the package mentioned above, not pip.
hint: See above for output from the failure.
`
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