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A few guides in how to use our tools, and some other people's tools as well.
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18S_taxonomy.rst
README.md
amplicons-no_overlap.rst
amplicons-overlap.rst
cat_reads
combine_taxonomy.py
otu_tables
resync
sina2otu
taxonomy_blast_parser.py
uc_tables
uncat_reads

README.md

Tutorials

No active work is currently being done on this branch, except very rare bug fixes. For up-to-date workflows, see https://github.com/ctmrbio/ctmr-amplicon

A few guides in how to use our tools, and some other people's tools as well. All scripts mentioned in the tutorials are also included in this folder.

Amplicons_overlap will teach you how to use Usearch to process amplicon libraries where the forward and reverse sequencing reads overlap.

Amplicons_no-overlap does the same for the case where the reads don't (or rarely) overlap. This one is more convoluted, so do try to get overlaps.

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