GFD-Net is a Cytoscape app designed to visualize and analyze the functional dissimilarity of gene networks. GFD-Net can analyze a gene network based on Gene Ontology (GO) and calculate a quantitative measure of its functional dissimilarity, i.e. a quantitative value of the degree of dissimilarity between the connected genes in it. What else
After the analysis, users can visualize the information retrieved from GO.
- For each gene the user can see its associated GO terms and its function (specified by a GO term) chosen as the most cohesive function in the set.
- For each edge the user can see the genes at its ends, the function chosen as the most cohesive function in the set for each one and the dissimilarity between them.
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Copyright 2014 Juan José Díaz Montaña
Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License.