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🐛 Not Reading In Slice Timing json in Bids Dataset #2103

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nimzodisaster opened this issue May 4, 2024 · 0 comments
Open
14 tasks

🐛 Not Reading In Slice Timing json in Bids Dataset #2103

nimzodisaster opened this issue May 4, 2024 · 0 comments

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@nimzodisaster
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Describe the bug

When I run the data config, I get this message:
[!] No scan parameter information found in your scan parameter configuration for the functional input file:
site: All, participant: All, session: All, series: rest_run-1
Here is the pattern of the data directory which includes {participant} {session} {task} and {run} keys per Bids 1.9x:

/BIDS_DATA/APP/sub-101314200/ses-4/func/sub-101314200_ses-4_task-rest_run-1_bold.nii.gz
/BIDS_DATA/APP/sub-101314200/ses-4/func/sub-101314200_ses-4_task-rest_run-1_bold.json
json file attached.

I am unsure whether its not finding the "SliceTiming" key in the json file, or just not finding the json.

data_settings_cpac.yml.txt

sub-101314200_ses-4_task-rest_run-1_bold.json

To reproduce

No response

Preconfig

  • default
  • abcd-options
  • anat-only
  • blank
  • ccs-options
  • fmriprep-options
  • fx-options
  • monkey
  • monkey-ABCD
  • ndmg
  • nhp-macaque
  • preproc
  • rbc-options
  • rodent

Custom pipeline configuration

c

Run command

c

Expected behavior

c

Acceptance criteria

c

Screenshots

No response

C-PAC version

1.8.6

Container platform

No response

Docker and/or Singularity version(s)

No response

Additional context

No response

@shnizzedy shnizzedy changed the title 🐛 [User-reported Bug] Not Reading In Slice Timing json in Bids Dataset 🐛 Not Reading In Slice Timing json in Bids Dataset Sep 13, 2024
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