./src/Main.sh documents the analysis steps and calls the various task-specific scripts in correct order.
Published article:
Ritari J, Hyvärinen K, Koskela S, Niittyvuopio R, Nihtinen A, Salmenniemi U, Putkonen M, Volin L, Kwan T, Pastinen T, Itälä- Remes M, Partanen J. Computational analysis of HLA-presentation of non-synonymous recipient mismatches indicates effect on the risk of chronic graft-versus-host disease after allogeneic HSCT. Front. Immunol., 16 July 2019 | https://doi.org/10.3389/fimmu.2019.01625