Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Preserve BEAST-style annotations #91

Open
josephwb opened this issue Sep 1, 2018 · 0 comments
Open

Preserve BEAST-style annotations #91

josephwb opened this issue Sep 1, 2018 · 0 comments
Assignees

Comments

@josephwb
Copy link
Member

josephwb commented Sep 1, 2018

Brought up by @mmatschiner. BEAST-style annotations are not preserved when editing the tree (e.g., pxrmt).

Example tree:
tree TREE1 = ((1[&dmv={0.1}],2[&dmv={0.2}]),3[&dmv={0.3}])[&dmv={0.1}]:0.0;

More standard node labels like )something are preserved.

So this has to do with differently treating things like )something as a 'name' while )[something] is a 'comment' (mentioned here). Fix seems relatively easy, although with some tree edits the annotations may need to be changed (e.g. edge lengths). For a first pass just make sure things make it through.

@josephwb josephwb self-assigned this Oct 25, 2024
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Projects
None yet
Development

No branches or pull requests

1 participant