Your source directory structure looks something like this:
- src
- Application
- Domain
- Infrastructure
- Presentation
- Deptrac (https://github.com/qossmic/deptrac)
- PHPAT (https://github.com/carlosas/phpat)
- phparkitect (https://github.com/phparkitect/arkitect)
Feel free to copy, change and use it for your projects!