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Orientation Reconstruction for Synchrotron X-ray Data

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FrankieLi/IceNine

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IceNine


Authors: Frankie Li (shiu.fai.li@gmail.com)


Acknowledging IceNine

To cite the code itself:

IceNine, Orientation Reconstruction for Synchrotron X-ray Data, https://github.com/FrankieLi/IceNine or the bibentry:

citation.bib

To cite the algorithm:

S. F. Li, and R. M. Suter, Adaptive reconstruction method for three-dimensional orientation imaging, Journal of Applied Crystallography, 2013.


Requirements:

XDM++ Boost 1.43 gcc >= 4.2


Descriptions:

-This is a forward model reconstruction code that implements [1]. Detailed reconstruction characteristics can be found in [1].

-Note that IceNine requires XDM++, which is a library developed in Carnegie Mellon University during S. F. Li's PhD Thesis. This library hosted by Carnegie Mellon University on GitHub.

-Because of lagacy reasons, file formats are currently limited to *.mic for output and *.bin and *.txt for input. This will hopefully change in the forthcoming releases.


Content:

Both XDM++ and Boost must be acquired separately and are not part of this distribution.

Src/ Source code for VPFFT -- Driver.cpp -- main driver for the IceNine application -- SearchTrait.h -- definition of an orientation search -- DiscreteAdaptive.h -- implementation of the adpative orientation search method.

ConfigFiles/ Example configuration files and detector files.


References

[1] S. F. Li, and R. M. Suter, Adaptive reconstruction method for three-dimensional orientation imaging, Journal of Applied Crystallography, 2013.

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