Author : Nicolas Favelin
Description of repository files:
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LesA-phyremodel.pse (compatible with PyMol)
The enzyme structure was built using Phyre2 server based on the structure of a known enzyme homologous of X. fastidiosa: LipA from X. oryzae (3H2I). 382 residues (99% of amino acid sequence from the protein) have been modelized with 100% confidence and 68% of identity. The 3 amino-acids of the catalytic triad are colored in magenta (selection cat_triad). The hydrolase part of the protein is colored in pink, while the lid domain (enzymatic pocket) is colored in green.
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LesA-phyre.ezm (compatible with Ezmol)
For online vizualisation: http://www.sbg.bio.ic.ac.uk/ezmol/
The 3 amino-acids of the catalytic triad are colored in red. The hydrolase part of the protein is colored in pink, while the lid domain (enzymatic pocket) is colored in green.
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LesA-phyre.pdb
Can be opened with any molecular visualisation software (Pymol, VMD, Chimera, etc...)
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pocket-LesA-phyre.pse (compatible with PyMol)
Representation of enzymatic pocket of LesA. The 3 amino-acids of the catalytic triad are colored in magenta (selection cat_triad). The mesh and surface representations allow to visualize the inside of the pocket.
==> https://github.com/GEC-git/LesA_model/archive/refs/heads/main.zip