• Dockerfile for running HBase on Ubuntu

    5 4 Apache-2.0 Updated Dec 14, 2016
  • Open source formats for scalable genomic processing systems using Avro. Apache 2 licensed.

    Shell 36 Apache-2.0 Updated Nov 6, 2016
  • Various scripts developed for the Opti-Thera project at the CRCHUM

    Java 2 Apache-2.0 Updated May 6, 2016
  • (Genomics) Dockerfile for running Adam - http://bdgenomics.org

    3 2 Apache-2.0 Updated Feb 12, 2016
  • 1000 Genome Project Metadata

    JavaScript Apache-2.0 Updated Jan 16, 2016
  • Ports the IBS/MDS/IBD functionality of Plink to Spark / ADAM

    Scala 1 5 Apache-2.0 Updated Nov 9, 2015
  • A web UI over genomic data

    Scala 1 Apache-2.0 Updated Oct 28, 2015
  • Sample Java application that communicates with HBase via the HBase API.

    Java 2 Apache-2.0 Updated Oct 6, 2015
  • Repository for all Genomic Projects

    Ruby Updated Sep 18, 2015
  • Portable cloud infrastructure for a genomic transformation pipeline using Adam

    Python 2 Updated Jul 23, 2015
  • Ce projet est un exemple démontrant premièrement comment convertir un fichier Avro en classes Java. Ensuite ce projet montre comment persister des données à l'aide de Parquet. Pour terminer, ce projet démontre comment sélectionner des données depuis les fichiers Parquets à l'aide de Spark.

    Scala Updated Jun 24, 2015
  • A comprehensive update to the PLINK association analysis toolset. Beta testing of the first new version (1.90), focused on speed and memory efficiency improvements, is finishing up. Future development will revolve around critical extensions to the core file format (multiallelic variants, dosage, phase).

    C 47 GPL-3.0 Updated May 13, 2015
  • (Genomics) Dockerfile for running Avocado - http://bdgenomics.org

    Apache-2.0 Updated Apr 14, 2015
  • (Genomics) Dockerfile for running plink v1 - http://pngu.mgh.harvard.edu/~purcell/plink/

    C++ 2 1 GPL-2.0 Updated Apr 14, 2015
  • Java Dockerfile for trusted automated Docker builds.

    393 MIT Updated Apr 11, 2015
  • Backend of the Mononews application: www.mononews.ca

    Apache-2.0 Updated Mar 11, 2015
  • Dockerfile for running Scala on Ubuntu

    Apache-2.0 Updated Mar 1, 2015
  • (Genomics) Dockerfile for running Snap (Scalable Nucleotide Alignment Program) - http://snap.cs.berkeley.edu/

    Apache-2.0 Updated Mar 1, 2015
  • A Variant Caller, Distributed. Apache 2 licensed.

    Scala 40 Updated Feb 20, 2015
  • A genomics processing engine and specialized file format built using Apache Avro, Apache Spark and Parquet. Apache 2 licensed.

    Scala 270 Updated Feb 18, 2015