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Add ability to launch breakpoint split view from alignments feature d…
…etails (#4215)
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140 changes: 140 additions & 0 deletions
140
plugins/alignments/src/AlignmentsFeatureDetail/BreakendOptionDialog.tsx
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,140 @@ | ||
| import React, { useState } from 'react' | ||
| import { observer } from 'mobx-react' | ||
| import { | ||
| Button, | ||
| Checkbox, | ||
| DialogActions, | ||
| DialogContent, | ||
| FormControlLabel, | ||
| } from '@mui/material' | ||
| import { makeStyles } from 'tss-react/mui' | ||
| import { getSession } from '@jbrowse/core/util' | ||
| import { Dialog } from '@jbrowse/core/ui' | ||
| import { ViewType } from '@jbrowse/core/pluggableElementTypes' | ||
|
|
||
| // locals | ||
| import { AlignmentFeatureWidgetModel } from './stateModelFactory' | ||
| import { getBreakpointSplitView } from './launchBreakpointSplitView' | ||
| import { getSnapshot } from 'mobx-state-tree' | ||
| import { ReducedFeature } from './getSAFeatures' | ||
|
|
||
| const useStyles = makeStyles()({ | ||
| block: { | ||
| display: 'block', | ||
| }, | ||
| }) | ||
|
|
||
| interface Track { | ||
| id: string | ||
| displays: { id: string; [key: string]: unknown }[] | ||
| [key: string]: unknown | ||
| } | ||
|
|
||
| function stripIds(arr: Track[]) { | ||
| return arr.map(({ id, displays, ...rest }) => ({ | ||
| ...rest, | ||
| displays: displays.map(({ id, ...rest }) => rest), | ||
| })) | ||
| } | ||
|
|
||
| function Checkbox2({ | ||
| checked, | ||
| label, | ||
| onChange, | ||
| }: { | ||
| checked: boolean | ||
| label: string | ||
| onChange: (event: React.ChangeEvent<HTMLInputElement>) => void | ||
| }) { | ||
| const { classes } = useStyles() | ||
| return ( | ||
| <FormControlLabel | ||
| className={classes.block} | ||
| control={<Checkbox checked={checked} onChange={onChange} />} | ||
| label={label} | ||
| /> | ||
| ) | ||
| } | ||
|
|
||
| const BreakendOptionDialog = observer(function ({ | ||
| model, | ||
| handleClose, | ||
| f1, | ||
| f2, | ||
| }: { | ||
| model: AlignmentFeatureWidgetModel | ||
| handleClose: () => void | ||
| f1: ReducedFeature | ||
| f2: ReducedFeature | ||
| viewType: ViewType | ||
| }) { | ||
| const [copyTracks, setCopyTracks] = useState(true) | ||
| const [mirror, setMirror] = useState(true) | ||
|
|
||
| return ( | ||
| <Dialog open onClose={handleClose} title="Breakpoint split view options"> | ||
| <DialogContent> | ||
| <Checkbox2 | ||
| checked={copyTracks} | ||
| onChange={event => setCopyTracks(event.target.checked)} | ||
| label="Copy tracks into the new view" | ||
| /> | ||
| <Checkbox2 | ||
| checked={mirror} | ||
| onChange={event => setMirror(event.target.checked)} | ||
| label="Mirror tracks vertically in vertically stacked view" | ||
| /> | ||
| </DialogContent> | ||
| <DialogActions> | ||
| <Button | ||
| onClick={() => { | ||
| const { view } = model | ||
| const session = getSession(model) | ||
| try { | ||
| const viewSnapshot = getBreakpointSplitView({ view, f1, f2 }) | ||
| const [view1, view2] = viewSnapshot.views | ||
| // eslint-disable-next-line @typescript-eslint/no-unnecessary-type-assertion | ||
| const viewTracks = getSnapshot(view.tracks) as Track[] | ||
|
|
||
| session.addView('BreakpointSplitView', { | ||
| ...viewSnapshot, | ||
| views: [ | ||
| { | ||
| ...view1, | ||
| tracks: stripIds(viewTracks), | ||
| offsetPx: view1.offsetPx - view.width / 2 + 100, | ||
| }, | ||
| { | ||
| ...view2, | ||
| tracks: stripIds( | ||
| mirror ? [...viewTracks].reverse() : viewTracks, | ||
| ), | ||
| offsetPx: view2.offsetPx - view.width / 2 + 100, | ||
| }, | ||
| ], | ||
| }) | ||
| } catch (e) { | ||
| console.error(e) | ||
| session.notify(`${e}`) | ||
| } | ||
| handleClose() | ||
| }} | ||
| variant="contained" | ||
| color="primary" | ||
| autoFocus | ||
| > | ||
| OK | ||
| </Button> | ||
| <Button | ||
| onClick={() => handleClose()} | ||
| color="secondary" | ||
| variant="contained" | ||
| > | ||
| Cancel | ||
| </Button> | ||
| </DialogActions> | ||
| </Dialog> | ||
| ) | ||
| }) | ||
|
|
||
| export default BreakendOptionDialog |
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31 changes: 31 additions & 0 deletions
31
plugins/alignments/src/AlignmentsFeatureDetail/Formatter.tsx
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,31 @@ | ||
| import React, { useState } from 'react' | ||
| import copy from 'copy-to-clipboard' | ||
|
|
||
| // this 'show more...' used specifically as a formatter on alignments feature | ||
| // details because long SEQ or CRAM files, even a single div full of a ton of | ||
| // data from a long read, can slow down the rest of the app | ||
| export default function Formatter({ value }: { value: unknown }) { | ||
| const [show, setShow] = useState(false) | ||
| const [copied, setCopied] = useState(false) | ||
| const display = String(value) | ||
| return display.length > 100 ? ( | ||
| <> | ||
| <button | ||
| type="button" | ||
| onClick={() => { | ||
| copy(display) | ||
| setCopied(true) | ||
| setTimeout(() => setCopied(false), 700) | ||
| }} | ||
| > | ||
| {copied ? 'Copied to clipboard' : 'Copy'} | ||
| </button> | ||
| <button type="button" onClick={() => setShow(val => !val)}> | ||
| {show ? 'Show less' : 'Show more'} | ||
| </button> | ||
| <div>{show ? display : `${display.slice(0, 100)}...`}</div> | ||
| </> | ||
| ) : ( | ||
| <div>{display}</div> | ||
| ) | ||
| } |
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