Add import/no-extraneous-dependencies rule back to repo (#2385)

.eslintrc.base.json

@@ -28,15 +28,13 @@
     "@typescript-eslint/no-empty-function": "off",
     "@typescript-eslint/no-unused-vars": ["warn"],
     "@typescript-eslint/no-unused-expressions": "off",
-    "no-use-before-define": "off",
     "@typescript-eslint/no-use-before-define": "off",
     "@typescript-eslint/no-var-requires": "off",
     "@typescript-eslint/no-redeclare": "off",
+
+    "no-use-before-define": "off",
     "curly": "error",
     "no-global-assign": "warn",
-    "react/no-danger": "warn",
-    "import/no-anonymous-default-export": "off",
-    "monorepo/no-internal-import": "off",
     "no-console": [
       "warn",
       {
@@ -46,6 +44,12 @@
     "no-debugger": "warn",
     "no-undef": "error",
     "no-underscore-dangle": "warn",
+
+    "import/no-extraneous-dependencies": "error",
+    "import/no-anonymous-default-export": "off",
+    "monorepo/no-internal-import": "off",
+
+    "react/no-danger": "warn",
     "react/destructuring-assignment": "error",
     "react/no-unused-prop-types": "error",
     "react/no-unused-state": "error",
@@ -59,13 +63,6 @@
       }
     ]
   },
-  "settings": {
-    "import/resolver": {
-      "node": {
-        "extensions": [".js", ".jsx", ".ts", ".tsx"]
-      }
-    }
-  },
   "overrides": [
     {
       "files": ["**/*.ts", "**/*.tsx"],
@@ -80,7 +77,16 @@
       }
     },
     {
-      "files": ["**/test/**", "**/*.test.[t,j]s", "**/*.test.[t,j]sx"],
+      "files": [
+        "**/test/**",
+        "**/*.test.[t,j]s",
+        "**/*.test.[t,j]sx",
+        "**/rescripts/*",
+        "**/tests/util.js",
+        "**/webpack.config.js",
+        "**/scripts/notarize.js",
+        "**/src/testUtil.ts"
+      ],
       "env": {
         "jest": true
       },

plugins/authentication/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/plugin-authentication",
-  "version": "1.3.0",
+  "version": "1.4.4",
   "description": "JBrowse 2 Authentication",
   "keywords": [
     "jbrowse",
@@ -41,6 +41,7 @@
   "peerDependencies": {
     "@jbrowse/core": "^1.0.0",
     "@material-ui/core": "^4.9.13",
+    "electron": "^15.0.0",
     "mobx": "^5.0.0",
     "mobx-react": "^6.0.0",
     "mobx-state-tree": "3.14.1",

plugins/grid-bookmark/package.json

@@ -35,11 +35,13 @@
     "useSrc": "node ../../scripts/useSrc.js"
   },
   "dependencies": {
+    "file-saver": "^2.0.0",
     "@material-ui/icons": "^4.9.1"
   },
   "peerDependencies": {
     "@jbrowse/core": "^1.0.0",
     "@jbrowse/plugin-config": "^1.0.0",
+    "@jbrowse/plugin-linear-genome-view": "^1.4.4",
     "@material-ui/core": "^4.9.13",
     "@material-ui/data-grid": "^4.0.0-alpha.37",
     "@material-ui/lab": "^4.0.0-alpha.45",

plugins/legacy-jbrowse/package.json

@@ -38,7 +38,8 @@
     "@gmod/nclist": "^0.1.1",
     "get-value": "^3.0.1",
     "set-value": "^4.0.1",
-    "buffer-crc32": "^0.2.13"
+    "buffer-crc32": "^0.2.13",
+    "generic-filehandle": "^2.2.0"
   },
   "peerDependencies": {
     "@jbrowse/core": "^1.0.0",

products/jbrowse-desktop/package.json

@@ -42,6 +42,7 @@
   "dependencies": {
     "@jbrowse/core": "^1.4.4",
     "@jbrowse/plugin-alignments": "^1.4.4",
+    "@jbrowse/plugin-authentication": "^1.4.4",
     "@jbrowse/plugin-bed": "^1.4.4",
     "@jbrowse/plugin-breakpoint-split-view": "^1.4.4",
     "@jbrowse/plugin-circular-view": "^1.4.4",
@@ -62,6 +63,7 @@
     "@jbrowse/plugin-sv-inspector": "^1.4.4",
     "@jbrowse/plugin-svg": "^1.4.4",
     "@jbrowse/plugin-trackhub-registry": "^1.4.4",
+    "@jbrowse/plugin-trix": "^1.4.4",
     "@jbrowse/plugin-variants": "^1.4.4",
     "@jbrowse/plugin-wiggle": "^1.4.4",
     "@material-ui/core": "^4.12.2",
@@ -70,6 +72,7 @@
     "@material-ui/lab": "^4.0.0-alpha.45",
     "clsx": "^1.0.4",
     "deepmerge": "^4.2.2",
+    "electron": "15.0.0",
     "electron-debug": "^3.0.1",
     "electron-is-dev": "^1.1.0",
     "electron-updater": "^4.3.9",
@@ -88,7 +91,8 @@
     "react-error-boundary": "^3.0.0",
     "react-sizeme": "^2.6.7",
     "rxjs": "^6.5.2",
-    "timeago.js": "^4.0.2"
+    "timeago.js": "^4.0.2",
+    "use-query-params": "1.1.3"
   },
   "browserslist": [
     "last 1 chrome version"

products/jbrowse-img/package.json

@@ -26,6 +26,8 @@
   },
   "dependencies": {
     "@jbrowse/react-linear-genome-view": "^1.4.4",
+    "@jbrowse/plugin-linear-genome-view": "^1.4.4",
+    "mobx": "^5.10.1",
     "react": "^17.0.1",
     "react-dom": "^17.0.1",
     "tmp": "^0.2.1",

products/jbrowse-img/src/index.js

@@ -1,5 +1,4 @@
 /* eslint-disable no-console */
-import 'abortcontroller-polyfill/dist/abortcontroller-polyfill-only'
 import fs from 'fs'
 import yargs from 'yargs'
 import { standardizeArgv, parseArgv } from './parseArgv'

products/jbrowse-img/src/renderRegion.js

@@ -1,4 +1,3 @@
-import 'regenerator-runtime/runtime'
 import { createViewState } from '@jbrowse/react-linear-genome-view'
 import { renderToSvg } from '@jbrowse/plugin-linear-genome-view'
 import { when } from 'mobx'

products/jbrowse-web/package.json

@@ -18,6 +18,7 @@
   "dependencies": {
     "@jbrowse/core": "^1.4.4",
     "@jbrowse/plugin-alignments": "^1.4.4",
+    "@jbrowse/plugin-authentication": "^1.4.4",
     "@jbrowse/plugin-bed": "^1.4.4",
     "@jbrowse/plugin-breakpoint-split-view": "^1.4.4",
     "@jbrowse/plugin-circular-view": "^1.4.4",
@@ -38,6 +39,7 @@
     "@jbrowse/plugin-sv-inspector": "^1.4.4",
     "@jbrowse/plugin-svg": "^1.4.4",
     "@jbrowse/plugin-trackhub-registry": "^1.4.4",
+    "@jbrowse/plugin-trix": "^1.4.4",
     "@jbrowse/plugin-variants": "^1.4.4",
     "@jbrowse/plugin-wiggle": "^1.4.4",
     "@material-ui/core": "^4.12.2",
@@ -49,6 +51,7 @@
     "copy-to-clipboard": "^3.3.1",
     "core-js": "^3.2.1",
     "crypto-js": "^3.0.0",
+    "file-saver": "^2.0.0",
     "fontsource-roboto": "3.0.3",
     "json-stable-stringify": "^1.0.1",
     "librpc-web-mod": "^1.1.2",