Add ability to access authenticated resources using pluggable internet accounts framework

[peterkxie]

This feature adds internet accounts to JBrowse 2 for use with authentication. This initially comes with support for 4 methods

1. OAuth
   • Dropbox
   • Google Drive
2. External Tokens (enter a token from an external resource to use in an Auth Header)
3. HTTPBasic

[cmdcolin]

random thing to note: the file selector for the "Open sequence" dialog will not be able to access authenticated resources on jbrowse desktop from it's start screen. no pluginmanager exists at the startscreen as is. if we needed to, we could maybe make a blank rootmodel or something of this sort to assist

[cmdcolin]

I found a possible race-condition but I found a failure while opening a Google Drive file for a BAM track

Re-entering the data in the same way resulted in a working track, and refreshing the page fixed the broken track

[cmdcolin]

Currently all tracks appear to fail to load on desktop when using the preloadedSessions e.g. checkbox of hg38 with this error

It is looking for e.g.

    const selectedId = location.internetAccountId

Which is undefined, that then it runs basically undefined.split('-')

[peterkxie]

I tried using a google drive share link on https://jbrowse.org/code/jb2/604_oauth_new_implementation/ but it results in 'Error 400: redirect_uri_mismatch' ?

Is the client id authorized for jbrowse.org?

I had the redirect uri for the main branch but had removed the redirect uri for this specific branch so that's why there was a mismatched

[peterkxie]

Currently all tracks appear to fail to load on desktop when using the preloadedSessions e.g. checkbox of hg38 with this error

It is looking for e.g.

    const selectedId = location.internetAccountId

Which is undefined, that then it runs basically undefined.split('-')

Thanks for catching that, I fixed it on the web rootmodel but forgot to sync over the changes to the desktop rootmodel too

[peterkxie]

While pairing with @garrettjstevens , realized that OAuth Authentication was not working on production jbrowse-desktop since the window.location is a file:// format which does not work well with OAuth redirect uri's. Changed desktop logic to use a dummy redirect_uri since we just need the information. Google drive does work on production desktop with these new cahnges

Dropbox seemed to stop working on desktop and web, it seems to have been broken even before these changes. We suspect it may have something to do with dropbox servers, since it was working for me on Friday without any changes to the code, and since there has been issues with various internet services being down today, we are going to double check tomorrow to see if it's a dropbox server issue or an actual issue with the code before merging

[cmdcolin]

Can we avoid the change to the data adapter constructor prototype? This change would, for example, break the quantseq plugin which uses getSubAdapter

[peterkxie]

will be moving pluginManager to the third param and making it optional

[peterkxie]

@cmdcolin when you have some time could you check out the changes in the latest commit (moving pm to optional and the third parameter) to make sure I did it correctly + it won't break older plugins now