Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Add jbrowse-img to monorepo #2336

Merged
merged 5 commits into from
Sep 22, 2021
Merged
Show file tree
Hide file tree
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension


Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
3 changes: 2 additions & 1 deletion package.json
Original file line number Diff line number Diff line change
Expand Up @@ -17,7 +17,8 @@
"format": "prettier --write .",
"check-format": "prettier --check .",
"typecheck": "tsc --noEmit",
"test-ci": "jest --ci --coverage",
"pretest-ci": "cd products/jbrowse-react-linear-genome-view;yarn build;cd ../../",
"test-ci": "jest --ci --coverage && jest --testMatch '**/*testmod.js'",
"built-test-ci": "jest --ci integration.test.js",
"test": "DEBUG_PRINT_LIMIT=0 jest"
},
Expand Down
14 changes: 14 additions & 0 deletions products/jbrowse-img/.babelrc.json
Original file line number Diff line number Diff line change
@@ -0,0 +1,14 @@
{
"presets": [
"@babel/preset-react",
["@babel/preset-env", { "targets": { "node": 10 } }]
],
"plugins": [
[
"@babel/transform-runtime",
{
"regenerator": true
}
]
]
}
3 changes: 3 additions & 0 deletions products/jbrowse-img/.gitignore
Original file line number Diff line number Diff line change
@@ -0,0 +1,3 @@
node_modules
*.svg
dist
55 changes: 55 additions & 0 deletions products/jbrowse-img/CHANGELOG.md
Original file line number Diff line number Diff line change
@@ -0,0 +1,55 @@
# v1.3.5

- Add pdf export functionality

# v1.3.4

- Update to @jbrowse/react-linear-genome-view@1.3.5

# v1.3.3

- Update to @jbrowse/react-linear-genome-view@1.3.3

# v1.3.2

- Update to @jbrowse/react-linear-genome-view@1.3.2

# v1.3.0

- Update to @jbrowse/react-linear-genome-view@1.3.0

# v1.2.8

- Add ability to automatically generate a PNG if you have rsvg-convert command installed and you supply an extension with png --out file.png

# v1.2.7

- Add react as a regular dependency instead of devDependency

# v1.2.6

- Build before publish

# v1.2.5

- Generate shebang on bin generated file

# v1.2.4

- Fix bin field in package.json

# v1.2.3

- Add @jbrowse/react-linear-genome-view to regular dependency

# v1.2.2

- Add files: dist field to package.json

# v1.2.1

- Add bin field to package.json

# v1.2.0

- Initial release!
12 changes: 12 additions & 0 deletions products/jbrowse-img/EXAMPLES.md
Original file line number Diff line number Diff line change
@@ -0,0 +1,12 @@
# More examples

![](img/skbr3_cov.png)

SKBR3 breast cancer cell line using

```
jb2export --loc all \
--bigwig coverage.bw scaletype:log fill:false resolution:superfine height:400 color:purple minmax:1:1024 \
--assembly hg19 \
--config data/config.json
```
Loading