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Handle .bgz file extension for text-index #2726

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merged 1 commit into from
Feb 9, 2022
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@cmdcolin cmdcolin commented Feb 9, 2022

Currently the code explicitly checks for .gz, but this helps allow .gz extensions. It could be more advanced and detect a gzip encoding regardless of file extension but this may help

Fixes #2718

@github-actions github-actions bot added the needs label triage Needs a label to show in changelog (breaking, enhancement, bug, documentation, or internal) label Feb 9, 2022
@cmdcolin cmdcolin added bug Something isn't working and removed needs label triage Needs a label to show in changelog (breaking, enhancement, bug, documentation, or internal) labels Feb 9, 2022
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codecov bot commented Feb 9, 2022

Codecov Report

Merging #2726 (3119063) into main (b43ed81) will decrease coverage by 0.01%.
The diff coverage is 66.66%.

Impacted file tree graph

@@            Coverage Diff             @@
##             main    #2726      +/-   ##
==========================================
- Coverage   60.75%   60.73%   -0.02%     
==========================================
  Files         561      561              
  Lines       26346    26346              
  Branches     6424     6424              
==========================================
- Hits        16007    16002       -5     
- Misses      10013    10018       +5     
  Partials      326      326              
Impacted Files Coverage Δ
products/jbrowse-cli/src/types/gtfAdapter.ts 0.00% <0.00%> (ø)
products/jbrowse-cli/src/types/gff3Adapter.ts 97.67% <100.00%> (ø)
products/jbrowse-cli/src/types/vcfAdapter.ts 91.66% <100.00%> (ø)
...nts/src/SNPCoverageRenderer/SNPCoverageRenderer.ts 66.05% <0.00%> (-5.51%) ⬇️
packages/core/util/analytics.ts 91.83% <0.00%> (+2.04%) ⬆️

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@rbuels rbuels merged commit 4587486 into main Feb 9, 2022
@rbuels rbuels deleted the handle_bgz_text_index branch February 9, 2022 18:53
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Ignore trailing semicolons in GFF3 attributes column
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