Allow choosing trackId when using text-index with --file with --fileId

[cmdcolin]

Fixes #2959

Let's you run a command like

jbrowse text-index --file t1.vcf.gz --fileId t1

By default, without --fileId, then the output assumes the trackId will be t1.vcf.gz (equal to the filename) but is overridden by --fileId

[codecov]

Codecov Report

Merging #3020 (f023e3a) into main (ba0975e) will decrease coverage by 0.00%.
The diff coverage is 50.00%.

@@            Coverage Diff             @@
##             main    #3020      +/-   ##
==========================================
- Coverage   61.20%   61.20%   -0.01%     
==========================================
  Files         586      586              
  Lines       26663    26666       +3     
  Branches     6466     6467       +1     
==========================================
+ Hits        16319    16320       +1     
- Misses      10037    10038       +1     
- Partials      307      308       +1     

Impacted Files	Coverage Δ
products/jbrowse-cli/src/commands/text-index.ts	69.23% <50.00%> (-0.77%)	⬇️
...quenceRenderer/components/DivSequenceRendering.tsx	92.55% <0.00%> (-2.13%)	⬇️
.../linear-genome-view/src/LinearGenomeView/index.tsx	85.23% <0.00%> (+0.33%)	⬆️

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[cmdcolin]

@bbimber do you think this would cover your use case for text indexing?

[bbimber]

@cmdcolin Yes, at least based off the code alone, I think this would.

[teresam856]

Will this override the entire track configuration with the new track id?

[cmdcolin]

The --file argument does not have any configuration file, so it just generates some trix (ix,ixx,meta.json) outputs. The --fileId argument would only rename the trackId that is used in those output files

[teresam856]

Gotcha. It would only be utilized to override the track id that is inferred from the file name that is being indexed.

[cmdcolin]

yep!

[cmdcolin]

maybe can merge for now:)