Handle alternate line endings

[garrettjstevens]

This does a global find-and-replace of .split('\n') with .split(/\n|\r\n|\r/). This should handle unix (\n), dos (\r\n) and old-style mac (\r) line-endings. Hopefully it helps avoid issues especially with users creating files on Windows, like this.

[codecov]

Codecov Report

Merging #3250 (2545628) into main (f7bd5b0) will increase coverage by 0.00%.
The diff coverage is 76.92%.

@@           Coverage Diff           @@
##             main    #3250   +/-   ##
=======================================
  Coverage   59.38%   59.39%           
=======================================
  Files         674      674           
  Lines       28782    28783    +1     
  Branches     7008     7008           
=======================================
+ Hits        17092    17095    +3     
+ Misses      11415    11413    -2     
  Partials      275      275           

Impacted Files	Coverage Δ
packages/core/data_adapters/CytobandAdapter.ts	41.66% <ø> (ø)
...parative-adapters/src/ChainAdapter/ChainAdapter.ts	0.00% <0.00%> (ø)
...parative-adapters/src/DeltaAdapter/DeltaAdapter.ts	0.00% <0.00%> (ø)
...s/src/MCScanAnchorsAdapter/MCScanAnchorsAdapter.ts	82.22% <ø> (ø)
...SimpleAnchorsAdapter/MCScanSimpleAnchorsAdapter.ts	0.00% <ø> (ø)
...tive-adapters/src/MashMapAdapter/MashMapAdapter.ts	0.00% <ø> (ø)
.../comparative-adapters/src/PAFAdapter/PAFAdapter.ts	65.11% <ø> (ø)
plugins/comparative-adapters/src/util.ts	100.00% <ø> (ø)
...fig/src/RefNameAliasAdapter/RefNameAliasAdapter.ts	92.30% <ø> (ø)
.../GridBookmarkWidget/components/ImportBookmarks.tsx	32.43% <ø> (ø)
... and 13 more

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[cmdcolin]

should be ok. it is a bit slower to do this regex but on the order of <500ms for even large files

[cmdcolin]

it is some question of whether these line endings will realistically be encountered in some of the data files, but, may not hurt either